Mahdi Zeraati

Mr. Mahdi Zeraati


Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 April 2018 in Nature Chemistry
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Journal Article
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MZMahdi Zeraati
Mahdi Zeraati
DLDavid B. Langley
David B. Langley
PSPeter Schofield
Peter Schofield
AMAaron L. Moye
Aaron L. Moye
RRRomain Rouet
Romain Rouet
DCDaniel Christ
Daniel Christ

6 April 2017 in Scientific Reports
Verified
Journal Article
Open access
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MZMahdi Zeraati
Mahdi Zeraati
AMAaron L. Moye
Aaron L. Moye
JWJason W. H. Wong
Jason W. H. Wong
DPDilmi Perera
Dilmi Perera
MCMark Cowley
Mark Cowley
Marcel DingerMarcel Dinger
Marcel Dinger
Cancer is a multifactorial disease driven by a combination of genetic and environmental factors. Many cancer driver mutations have been characterised in protein-coding regions of the genome. However, mutations in noncoding regions associated with cancer have been less investigated. G-quadruplex (G4) nucleic acids are four-stranded secondary structures formed in guanine-rich sequences and prevalent in the regulatory regions. In this study, we used published whole cancer genome sequence data to find mutations in cancer patients that overlap potential RNA G4-forming sequences in 5′ UTRs. Using RNAfold, we assessed the effect of these mutations on the thermodynamic stability of predicted RNA G4s in the context of full-length 5′ UTRs. Of the 217 identified mutations, we found that 33 are predicted to destabilise and 21 predicted to stabilise potential RNA G4s. We experimentally validated the effect of destabilising mutations in the 5′ UTRs of BCL2 and CXCL14 and one stabilising mutation in the 5′ UTR of TAOK2. These mutations resulted in an increase or a decrease in translation of these mRNAs, respectively. These findings suggest that mutations that modulate the G4 stability in the noncoding regions could act as cancer driver mutations, which present an opportunity for early cancer diagnosis using individual sequencing information.

1 January 2007 in Drug Delivery
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Journal Article
Open access
MBMohammad Barzegar-Jalali
Mohammad Barzegar-Jalali
KAKhosro Adibkia
Khosro Adibkia
GMGhobad Mohammadi
Ghobad Mohammadi
MZMahdi Zeraati
Mahdi Zeraati
BBBehnaz Aghaee Ghare Bolagh
Behnaz Aghaee Ghare Bolagh
Ali NokhodchiAli Nokhodchi
Ali Nokhodchi
Hard gelatin capsule was coated by a cellulose acetate as a semipermeable membrane with or without castor oil and filled with propranolol hydrochloride and sorbitol as an osmotic agent. After sealing the capsule with white bees wax plug, the onset of release and dissolution rate of the drug were studied. Water penetration into the capsule from the dissolution medium increases simultaneously the osmotic and hydrostatic pressures of its content. When the hydrostatic pressure is high enough to overweigh the gravity and frictional forces of the plug, the expulsion of the plug occurs and drug release starts. The effects of thicknesses of the membrane and plug as well as the concentrations of cellulose acetate and castor oil on the onset of drug release were presented by a polynomial model. We found that the effect of plug thickness on the onset of release is more important when the membrane is thicker. The results showed that the presence of caster oil in coating formulation (cellulose acetate 10% or 15%) increased the onset of release (to values). The onset of release varied from 0.6 to 10.5 hr among which the onset times of 4.2, 4.8, 5.9, 5.5, 7.5, 5.0, 7.8 and 10.5 hr could be of use for either chronotherapeutic purposes in protection of patients against heart attacks and strokes during early morning hours or reducing daily frequency of dosage.

25 October 2017 in Acta Crystallographica Section D Structural Biology
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Journal Article
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DLDavid Brent Langley
David Brent Langley
BCBen Crossett
Ben Crossett
PSPeter Schofield
Peter Schofield
JJJenny Jackson
Jenny Jackson
MZMahdi Zeraati
Mahdi Zeraati
DCDaniel Christ
Daniel Christ
Duck egg lysozyme (DEL) is a widely used model antigen owing to its capacity to bind with differential affinity to anti-chicken egg lysozyme antibodies. However, no structures of DEL have so far been reported, and the situation had been complicated by the presence of multiple isoforms and conflicting reports of primary sequence. Here, the structures of two DEL isoforms from the eggs of the commonly used Pekin duck (Anas platyrhynchos) are reported. Using structural analyses in combination with mass spectrometry, non-ambiguous DEL primary sequences are reported. Furthermore, the structures and sequences determined here enable rationalization of the binding affinity of DEL for well documented landmark anti-lysozyme antibodies.