Si-Yi Chen

Dr. Si-Yi Chen


Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 April 2019 in Nature Medicine
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Journal Article
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ZYZhitao Ying
Zhitao Ying
XHXue F. Huang
Xue F. Huang
XXXiaoyu Xiang
Xiaoyu Xiang
YLYanling Liu
Yanling Liu
XKXi Kang
Xi Kang
SCSi-Yi Chen
Si-Yi Chen

13 March 2020 in Nature Communications
Verified
Journal Article
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GWGuan Wang
Guan Wang
XKXi Kang
Xi Kang
KCKatherine S. Chen
Katherine S. Chen
TJTiffany Jehng
Tiffany Jehng
LJLindsey Jones
Lindsey Jones
SCSi-Yi Chen
Si-Yi Chen
Oncolytic viruses offer an in situ vaccination approach to activate tumor-specific T cell responses. However, the upregulation of PD-L1 expression on tumor cells and immune cells leads to tumor resistance to oncolytic immunotherapy. In this study, we generate an engineered oncolytic virus that coexpresses a PD-L1 inhibitor and GM-CSF. We find that the oncolytic virus is able to secrete the PD-L1 inhibitor that systemically binds and inhibits PD-L1 on tumor cells and immune cells. Importantly, the intratumoral injection with the oncolytic virus overcomes PD-L1-mediated immunosuppression during both the priming and effector phases, provokes systemic T cell responses against dominant and subdominant neoantigen epitopes derived from mutations, and leads to an effective rejection of both virus-injected and distant tumors. In summary, this engineered oncolytic virus is able to activate tumor neoantigen-specific T cell responses, providing a potent, individual tumor-specific oncolytic immunotherapy for cancer patients, especially those resistant to PD-1/PD-L1 blockade therapy.

2 March 2008 in Nature Medicine
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Journal Article
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XSXiao-Tong Song
Xiao-Tong Song
KKKevin Evel Kabler
Kevin Evel Kabler
LSLei Shen
Lei Shen
LRLisa Rollins
Lisa Rollins
XHXue F Huang
Xue F Huang
SCSi-Yi Chen
Si-Yi Chen

24 August 2016 in Scientific Reports
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Journal Article
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KCKe-Zhong Chen
Ke-Zhong Chen
FLFeng Lou
Feng Lou
FYFan Yang
Fan Yang
JZJing-Bo Zhang
Jing-Bo Zhang
HYHua Ye
Hua Ye
JWJun Wang
Jun Wang
Circulating tumor DNA (ctDNA) isolated from peripheral blood has recently been shown to be an alternative source to detect gene mutations in primary tumors; however, most previous studies have focused on advanced stage cancers and few have evaluated ctDNA detection in early-stage lung cancer. In the present study, blood and tumor samples were collected prospectively from 58 early-stage non-small lung cancer (NSCLC) patients (stages IA, IB and IIA) and a targeted sequencing approach was used to detect somatic driver mutations in matched tumor DNA (tDNA) and plasma ctDNA. We identified frequent driver mutations in plasma ctDNA and tDNA in EGFR, KRAS, PIK3CA and TP53 and less frequent mutations in other genes, with an overall study concordance of 50.4% and sensitivity and specificity of 53.8% and 47.3%, respectively. Cell-free (cfDNA) concentrations were found to be significantly associated with some clinical features, including tumor stage and subtype. Importantly, the presence of cfDNA had a higher positive predictive value than that of currently used protein tumor biomarkers. This study demonstrates the feasibility of identifying plasma ctDNA mutations in the earliest stage lung cancer patients via targeted sequencing, demonstrating a potential utility of targeted sequencing of ctDNA in the clinical management of NSCLC.

19 September 2016 in Scientific Reports
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Journal Article
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NGNannan Guo
Nannan Guo
FLFeng Lou
Feng Lou
YMYongfu Ma
Yongfu Ma
JLJie Li
Jie Li
BYBo Yang
Bo Yang
YLYang Liu
Yang Liu
Circulating tumor DNA (ctDNA) in peripheral blood is a “liquid biopsy” that contains representative tumor information including gene mutations. Additionally, repeated ctDNA samples can be easily obtained to monitor response to treatment and disease progression, which may be especially valuable to lung cancer patients with tumors that cannot be easily biopsied or removed. To investigate the changes in ctDNA after surgical tumor resection, tumor and blood samples obtained before and after surgery were collected prospectively from 41 non-small lung cancer (NSCLC) patients. Somatic driver mutations in tumor DNA (tDNA) and pre- and post-op plasma ctDNA sample pairs were identified by targeted sequencing in several genes including EGFR, KRAS, and TP53 with an overall study concordance of 78.1% and sensitivity and specificity of 69.2% and 93.3%, respectively. Importantly, the frequency of 91.7% of ctDNA mutations decreased after surgery and these changes were observed as little as 2 days post-op. Moreover, the presence of ctDNA had a higher positive predictive value than that of six tumor biomarkers in current clinical use. This study demonstrates the use of targeted sequencing to reliably identify ctDNA changes in response to treatment, indicating a potential utility of this approach in the clinical management of NSCLC.

17 October 2013 in Blood
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Journal Article
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TWTao Wang
Tao Wang
VNVijayalakshmi Nandakumar
Vijayalakshmi Nandakumar
XJXiao-Xia Jiang
Xiao-Xia Jiang
LJLindsey Jones
Lindsey Jones
AYAn-Gang Yang
An-Gang Yang
SCSi-Yi Chen
Si-Yi Chen
Key Points: Mysm1 is required to maintain the quiescence and pool size of HSC, and its deletion severely impairs the survival and function of HSC. Mysm1 controls HSC homeostasis by regulating Gfi1 expression via modulating histone modifications and transcriptional factors recruitment.