Barbara Zambelli

Dr. Barbara Zambelli

Department of Pharmacy and Biotechnology, Alma Mater Studiorum University di Bologna, Bologna, Italy
orcid

Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 December 2016 in Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
Verified
Journal Article
Closed access
Barbara ZambelliBarbara Zambelli
Barbara Zambelli
VUVladimir N. Uversky
Vladimir N. Uversky
Stefano CiurliStefano Ciurli
Stefano Ciurli

18 November 2013
Verified
Book Chapter
Closed access
PDF file
Barbara ZambelliBarbara Zambelli
Barbara Zambelli
Stefano CiurliStefano Ciurli
Stefano Ciurli

20 September 2008 in Biochemistry
Verified
Journal Article
Closed access
ASAlice Soragni
Alice Soragni
Barbara ZambelliBarbara Zambelli
Barbara Zambelli
MMMarco D. Mukrasch
Marco D. Mukrasch
JBJacek Biernat
Jacek Biernat
SJSadasivam Jeganathan
Sadasivam Jeganathan
MZMarkus Zweckstetter
Markus Zweckstetter

1 February 2005 in Journal of Biological Chemistry
Verified
Journal Article
Open access
Barbara ZambelliBarbara Zambelli
Barbara Zambelli
MSMassimiliano Stola
Massimiliano Stola
Francesco MusianiFrancesco Musiani
Francesco Musiani
KVKris De Vriendt
Kris De Vriendt
BSBart Samyn
Bart Samyn
Stefano CiurliStefano Ciurli
Stefano Ciurli
Bacillus pasteurii UreG, a chaperone involved in the urease active site assembly, was overexpressed in Escherichia coli BL21(DE3) and purified to homogeneity. The identity of the recombinant protein was confirmed by SDS-PAGE, protein sequencing, and mass spectrometry. A combination of size exclusion chromatography and multiangle and dynamic laser light scattering established that BpUreG is present in solution as a dimer. Analysis of circular dichroism spectra indicated that the protein contains large portions of helices (15%) and strands (29%), whereas NMR spectroscopy indicated the presence of conformational fluxionality of the protein backbone in solution. BpUreG catalyzes the hydrolysis of GTP with a kcat=0.04 min(-1), confirming a role for this class of proteins in coupling energy requirements and nickel incorporation into the urease active site. BpUreG binds two Zn2+ ions per dimer, with a KD=42 +/- 3 microm, and has a 10-fold lower affinity for Ni2+. A structural model for BpUreG was calculated by using threading algorithms. The protein, in the fully folded state, features the typical structural architecture of GTPases, with an open beta-barrel surrounded by alpha-helices and a P-loop at the N terminus. The protein dynamic behavior observed in solution is critically discussed relative to the structural model, using algorithms for disorder predictions. The results suggest that UreG proteins belong to the class of intrinsically unstructured proteins that need the interaction with cofactors or other protein partners to perform their function. It is also proposed that metal ions such as Zn2+ could have important structural roles in the urease activation process.

27 May 2009 in Plant Physiology
Verified
Journal Article
Closed access
PZPaola Zubini
Paola Zubini
Barbara ZambelliBarbara Zambelli
Barbara Zambelli
Francesco MusianiFrancesco Musiani
Francesco Musiani
Stefano CiurliStefano Ciurli
Stefano Ciurli
PBPaolo Bertolini
Paolo Bertolini
EBElena Baraldi
Elena Baraldi
PR-10 proteins are a family of pathogenesis-related (PR) allergenic proteins playing multifunctional roles. The peach (Prunus persica) major allergen, Pru p 1.01, and its isoform, Pru p 1.06D, were found highly expressed in the fruit skin at the pit hardening stage, when fruits transiently lose their susceptibility to the fungal pathogen Monilinia spp. To investigate the possible role of the two Pru p 1 isoforms in plant defense, the recombinant proteins were expressed in Escherichia coli and purified. Light scattering experiments and circular dichroism spectroscopy showed that both proteins are monomers in solution with secondary structures typical of PR-10 proteins. Even though the proteins do not display direct antimicrobial activity, they both act as RNases, a function possibly related to defense. The RNase activity is different for the two proteins, and only that of Pru p 1.01 is affected in the presence of the cytokinin zeatin, suggesting a physiological correlation between Pru p 1.01 ligand binding and enzymatic activity. The binding of zeatin to Pru p 1.01 was evaluated using isothermal titration calorimetry, which provided information on the stoichiometry and on the thermodynamic parameters of the interaction. The structural architecture of Pru p 1.01 and Pru p 1.06D was obtained by homology modeling, and the differences in the binding pockets, possibly accounting for the observed difference in binding activity, were evaluated.

2 September 2008 in Proteins: Structure, Function, and Bioinformatics
Verified
Journal Article
Closed access
PDF file
Barbara ZambelliBarbara Zambelli
Barbara Zambelli
Paola TuranoPaola Turano
Paola Turano
Francesco MusianiFrancesco Musiani
Francesco Musiani
PNPaolo Neyroz
Paolo Neyroz
Stefano CiurliStefano Ciurli
Stefano Ciurli