Zachary Z. Freyberg

Dr. Zachary Z. Freyberg

orcid

Research Focus & Metrics

Academic Career Length

34Years (1993-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
16 June 1997 in Journal of Cell Biology
Verified
Journal Article
Open access
MBMargaret Husta Butler
Margaret Husta Butler
CDCarol David
Carol David
GOGian-Carlo Ochoa
Gian-Carlo Ochoa
ZFZachary Z. Freyberg
Zachary Z. Freyberg
LDLaurie Daniell
Laurie Daniell
PCPietro De Camilli
Pietro De Camilli
Amphiphysin (amphiphysin I), a dominant autoantigen in paraneoplastic Stiff-man syndrome, is a neuronal protein highly concentrated in nerve terminals, where it has a putative role in endocytosis. The yeast homologue of amphiphysin, Rvs167, has pleiotropic functions, including a role in endocytosis and in actin dynamics, suggesting that amphiphysin may also be implicated in the function of the presynaptic actin cytoskeleton. We report here the characterization of a second mammalian amphiphysin gene, amphiphysin II (SH3P9; BIN1), which encodes products primarily expressed in skeletal muscle and brain, as differentially spliced isoforms. In skeletal muscle, amphiphysin II is concentrated around T tubules, while in brain it is concentrated in the cytomatrix beneath the plasmamembrane of axon initial segments and nodes of Ranvier. In both these locations, amphiphysin II is colocalized with splice variants of ankyrin3 (ankyrinG), a component of the actin cytomatrix. In the same regions, the presence of clathrin has been reported. These findings support the hypothesis that, even in mammalian cells, amphiphysin/Rvs family members have a role both in endocytosis and in actin function and suggest that distinct amphiphysin isoforms contribute to define distinct domains of the cortical cytoplasm. Since amphiphysin II (BIN1) was reported to interact with Myc, it may also be implicated in a signaling pathway linking the cortical cytoplasm to nuclear function.

1 April 2010 in American Journal of Psychiatry
Verified
Journal Article
Closed access
ZFZachary Z. Freyberg
Zachary Z. Freyberg
SFStephen J. Ferrando
Stephen J. Ferrando
JJJonathan A. Javitch
Jonathan A. Javitch

10 October 2017 in The EMBO Journal
Verified
Journal Article
Open access
PDF file
MPMarta Pera
Marta Pera
DLDelfina Larrea
Delfina Larrea
CGCristina Guardia‐Laguarta
Cristina Guardia‐Laguarta
JMJorge Montesinos
Jorge Montesinos
KVKevin R Velasco
Kevin R Velasco
Estela Area GomezEstela Area Gomez
Estela Area Gomez
In the amyloidogenic pathway associated with Alzheimer disease (AD), the amyloid precursor protein (APP) is cleaved by β‐secretase to generate a 99‐aa C‐terminal fragment (C99) that is then cleaved by γ‐secretase to generate the β‐amyloid (Aβ) found in senile plaques. In previous reports, we and others have shown that γ‐secretase activity is enriched in mitochondria‐associated endoplasmic reticulum (ER) membranes (MAM) and that ER–mitochondrial connectivity and MAM function are upregulated in AD. We now show that C99, in addition to its localization in endosomes, can also be found in MAM, where it is normally processed rapidly by γ‐secretase. In cell models of AD, however, the concentration of unprocessed C99 increases in MAM regions, resulting in elevated sphingolipid turnover and an altered lipid composition of both MAM and mitochondrial membranes. In turn, this change in mitochondrial membrane composition interferes with the proper assembly and activity of mitochondrial respiratory supercomplexes, thereby likely contributing to the bioenergetic defects characteristic of AD.

1 October 2021 in Biological Psychiatry
Verified
Journal Article
Open access
MSMarianne L. Seney
Marianne L. Seney
SKSam-Moon Kim
Sam-Moon Kim
JGJill R. Glausier
Jill R. Glausier
MHMariah A. Hildebrand
Mariah A. Hildebrand
XXXiangning Xue
Xiangning Xue
RLRyan W. Logan
Ryan W. Logan
Prevalence rates of opioid use disorder (OUD) have increased dramatically, accompanied by a surge of overdose deaths. While opioid dependence has been extensively studied in preclinical models, an understanding of the biological alterations that occur in the brains of people who chronically use opioids and who are diagnosed with OUD remains limited. To address this limitation, RNA sequencing was conducted on the dorsolateral prefrontal cortex and nucleus accumbens, regions heavily implicated in OUD, from postmortem brains in subjects with OUD. We performed RNA sequencing on the dorsolateral prefrontal cortex and nucleus accumbens from unaffected comparison subjects (n = 20) and subjects diagnosed with OUD (n = 20). Our transcriptomic analyses identified differentially expressed transcripts and investigated the transcriptional coherence between brain regions using rank-rank hypergeometric orderlap. Weighted gene coexpression analyses identified OUD-specific modules and gene networks. Integrative analyses between differentially expressed transcripts and genome-wide association study datasets using linkage disequilibrium scores assessed the genetic liability of psychiatric-related phenotypes in OUD. Rank-rank hypergeometric overlap analyses revealed extensive overlap in transcripts between the dorsolateral prefrontal cortex and nucleus accumbens in OUD, related to synaptic remodeling and neuroinflammation. Identified transcripts were enriched for factors that control proinflammatory cytokine, chondroitin sulfate, and extracellular matrix signaling. Cell-type deconvolution implicated a role for microglia as a potential driver for opioid-induced neuroplasticity. Linkage disequilibrium score analysis suggested genetic liabilities for risky behavior, attention-deficit/hyperactivity disorder, and depression in subjects with OUD. Overall, our findings suggest connections between the brain's immune system and opioid dependence in the human brain.

1 April 2001 in Molecular Biology of the Cell
Verified
Journal Article
Closed access
ZFZachary Z. Freyberg
Zachary Z. Freyberg
DSDavid Sweeney
David Sweeney
ASAnirban Siddhanta
Anirban Siddhanta
Sylvain BourgoinSylvain Bourgoin
Sylvain Bourgoin
MFMichael Frohman
Michael Frohman
DSDennis Shields
Dennis Shields
Phospholipase D (PLD) hydrolyzes phosphatidylcholine to generate phosphatidic acid. In mammalian cells this reaction has been implicated in the recruitment of coatomer to Golgi membranes and release of nascent secretory vesicles from the trans-Golgi network. These observations suggest that PLD is associated with the Golgi complex; however, to date, because of its low abundance, the intracellular localization of PLD has been characterized only indirectly through overexpression of chimeric proteins. We have used highly sensitive antibodies to PLD1 together with immunofluorescence and immunogold electron microscopy as well as cell fractionation to identify the intracellular localization of endogenous PLD1 in several cell types. Although PLD1 had a diffuse staining pattern, it was enriched significantly in the Golgi apparatus and was also present in cell nuclei. On fragmentation of the Golgi apparatus by treatment with nocodazole, PLD1 closely associated with membrane fragments, whereas after inhibition of PA synthesis, PLD1 dissociated from the membranes. Overexpression of an hemagglutinin-tagged form of PLD1 resulted in displacement of the endogenous enzyme from its perinuclear localization to large vesicular structures. Surprisingly, when the Golgi apparatus collapsed in response to brefeldin A, the nuclear localization of PLD1 was enhanced significantly. Our data show that the intracellular localization of PLD1 is consistent with a role in vesicle trafficking from the Golgi apparatus and suggest that it also functions in the cell nucleus.

1 August 2010 in Trends in Pharmacological Sciences
Verified
Journal Article
Closed access
CKCaline S. Karam
Caline S. Karam
JBJacob S. Ballon
Jacob S. Ballon
NBNancy M. Bivens
Nancy M. Bivens
ZFZachary Z. Freyberg
Zachary Z. Freyberg
RGRagy R. Girgis
Ragy R. Girgis
JJJonathan A. Javitch
Jonathan A. Javitch