Nam-Chul Ha

Dr. Nam-Chul Ha

Seoul National University College of Agriculture and Life Sciences
orcid

Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 December 2008 in PLOS ONE
Verified
Journal Article
Open access
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SPShunfu Piao
Shunfu Piao
SLSun-Hye Lee
Sun-Hye Lee
HKHyunjoon Kim
Hyunjoon Kim
SYSoohwan Yum
Soohwan Yum
JSJennifer L Stamos
Jennifer L Stamos
NHNam-Chul Ha
Nam-Chul Ha
Wnt/β-catenin signaling plays a central role in development and is also involved in a diverse array of diseases. Binding of Wnts to the coreceptors Frizzled and LRP6/5 leads to phosphorylation of PPPSPxS motifs in the LRP6/5 intracellular region and the inhibition of GSK3β bound to the scaffold protein Axin. However, it remains unknown how GSK3β is specifically inhibited upon Wnt stimulation. Here, we show that overexpression of the intracellular region of LRP6 containing a Ser/Thr rich cluster and a PPPSPxS motif impairs the activity of GSK3β in cells. Synthetic peptides containing the PPPSPxS motif strongly inhibit GSK3β in vitro only when they are phosphorylated. Microinjection of these peptides into Xenopus embryos confirms that the phosphorylated PPPSPxS motif potentiates Wnt-induced second body axis formation. In addition, we show that the Ser/Thr rich cluster of LRP6 plays an important role in LRP6 binding to GSK3β. These observations demonstrate that phosphorylated LRP6/5 both recruits and directly inhibits GSK3β using two distinct portions of its cytoplasmic sequence, and suggest a novel mechanism of activation in this signaling pathway.

30 April 2015 in Proceedings of the National Academy of Sciences
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Journal Article
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IJInseong Jo
Inseong Jo
ICIn-Young Chung
In-Young Chung
HBHee-Won Bae
Hee-Won Bae
JKJin-Sik Kim
Jin-Sik Kim
SSSaemee Song
Saemee Song
NHNam-Chul Ha
Nam-Chul Ha
Significance: In gram-negative bacteria, OxyR is the master peroxide sensor that regulates the transcription of defense genes in response to a low level of cellular H 2 O 2 via a rapid kinetic reaction. In this study, we present the first, to our knowledge, full-length structures of peroxide-sensing transcription regulator OxyR together with an oxidation intermediate-mimicking structure. The structures show all of the structural features describing the tetrameric assembly and a bound H 2 O 2 molecule near the conserved cysteine. Combining the structural results, we reveal a step-by-step molecular mechanism for OxyR from H 2 O 2 sensing to structural changes for transcriptional activation. Our study provides a structural basis for potentially answering key questions about the role of the cysteine residue in other Cys-based sensors, even mammalian ones, in response to various oxidants.

15 December 2005 in The EMBO Journal
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Journal Article
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SPShunfu Piao
Shunfu Piao
YSYoung‐Lan Song
Young‐Lan Song
JKJung Hyun Kim
Jung Hyun Kim
SPSam Yong Park
Sam Yong Park
JPJi Won Park
Ji Won Park
NHNam-Chul Ha
Nam-Chul Ha
EMBO Press is an editorially independent publishing platform for the development of EMBO scientific publications.

1 February 2015 in Molecules and Cells
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Journal Article
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JKJin-Sik Kim
Jin-Sik Kim
HJHyeongseop Jeong
Hyeongseop Jeong
SSSaemee Song
Saemee Song
HKHye-Yeon Kim
Hye-Yeon Kim
KLKangseok Lee
Kangseok Lee
NHNam-Chul Ha
Nam-Chul Ha
Jin-Sik Kim, Hyeongseop Jeong, Saemee Song, Hye-Yeon Kim, Kangseok Lee, Jaekyung Hyun, and Nam-Chul Ha. Mol. Cells 2015;38:180-6. https://doi.org/10.14348/molcells.2015.2277

21 August 2019 in Nature Communications
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Journal Article
Open access
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JAJinsook Ahn
Jinsook Ahn
IJInseong Jo
Inseong Jo
SKSo-Mi Kang
So-Mi Kang
SHSeokho Hong
Seokho Hong
SKSuhyeon Kim
Suhyeon Kim
NHNam-Chul Ha
Nam-Chul Ha
Nuclear structure and function are governed by lamins, which are intermediate filaments that mostly consist of α-helices. Different lamin assembly models have been proposed based on low resolution and fragmented structures. However, their assembly mechanisms are still poorly understood at the molecular level. Here, we present the crystal structure of a long human lamin fragment at 3.2 Å resolution that allows the visualization of the features of the full-length protein. The structure shows an anti-parallel arrangement of the two coiled-coil dimers, which is important for the assembly process. We further discover an interaction between the lamin dimers by using chemical cross-linking and mass spectrometry analysis. Based on these two interactions, we propose a molecular mechanism for lamin assembly that is in agreement with a recent model representing the native state and could explain pathological mutations. Our findings also provide the molecular basis for assembly mechanisms of other intermediate filaments.

1 May 2011 in Journal of Biological Chemistry
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Journal Article
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YXYongbin Xu
Yongbin Xu
MLMinho Lee
Minho Lee
AMArne Moeller
Arne Moeller
SSSaemee Song
Saemee Song
BYBo-Young Yoon
Bo-Young Yoon
NHNam-Chul Ha
Nam-Chul Ha
Gram-negative bacteria expel diverse toxic chemicals through the tripartite efflux pumps spanning both the inner and outer membranes. The Escherichia coli AcrAB-TolC pump is the principal multidrug exporter that confers intrinsic drug tolerance to the bacteria. The inner membrane transporter AcrB requires the outer membrane factor TolC and the periplasmic adapter protein AcrA. However, it remains ambiguous how the three proteins are assembled. In this study, a hexameric model of the adapter protein was generated based on the propensity for trimerization of a dimeric unit, and this model was further validated by presenting its channel-forming property that determines the substrate specificity. Genetic, in vitro complementation, and electron microscopic studies provided evidence for the binding of the hexameric adapter protein to the outer membrane factor in an intermeshing cogwheel manner. Structural analyses suggested that the adapter covers the periplasmic region of the inner membrane transporter. Taken together, we propose an adapter bridging model for the assembly of the tripartite pump, where the adapter protein provides a bridging channel and induces the channel opening of the outer membrane factor in the intermeshing tip-to-tip manner.