JM Fernandes

Dr. JM Fernandes

Universidade de Aveiro
orcid

Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 January 2016 in PLOS ONE
Verified
Journal Article
Open access
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JCJoão Paulo Silva Cunha
João Paulo Silva Cunha
HCHugo Choupina
Hugo Choupina
ARAna Rocha
Ana Rocha
JFJM Fernandes
JM Fernandes
FAFelix Achilles
Felix Achilles
SNSoheyl Noachtar
Soheyl Noachtar
Epilepsy is a common neurological disorder which affects 0.5–1% of the world population. Its diagnosis relies both on Electroencephalogram (EEG) findings and characteristic seizure−induced body movements − called seizure semiology. Thus, synchronous EEG and (2D)video recording systems (known as Video−EEG) are the most accurate tools for epilepsy diagnosis. Despite the establishment of several quantitative methods for EEG analysis, seizure semiology is still analyzed by visual inspection, based on epileptologists’ subjective interpretation of the movements of interest (MOIs) that occur during recorded seizures. In this contribution, we present NeuroKinect, a low-cost, easy to setup and operate solution for a novel 3Dvideo-EEG system. It is based on a RGB-D sensor (Microsoft Kinect camera) and performs 24/7 monitoring of an Epilepsy Monitoring Unit (EMU) bed. It does not require the attachment of any reflectors or sensors to the patient’s body and has a very low maintenance load. To evaluate its performance and usability, we mounted a state-of-the-art 6-camera motion-capture system and our low-cost solution over the same EMU bed. A comparative study of seizure-simulated MOIs showed an average correlation of the resulting 3D motion trajectories of 84.2%. Then, we used our system on the routine of an EMU and collected 9 different seizures where we could perform 3D kinematic analysis of 42 MOIs arising from the temporal (TLE) (n = 19) and extratemporal (ETE) brain regions (n = 23). The obtained results showed that movement displacement and movement extent discriminated both seizure MOI groups with statistically significant levels (mean = 0.15 m vs. 0.44 m, p<0.001; mean = 0.068 m3 vs. 0.14 m3, p<0.05, respectively). Furthermore, TLE MOIs were significantly shorter than ETE (mean = 23 seconds vs 35 seconds, p<0.01) and presented higher jerking levels (mean = 345 ms−3 vs 172 ms−3, p<0.05). Our newly implemented 3D approach is faster by 87.5% in extracting body motion trajectories when compared to a 2D frame by frame tracking procedure. We conclude that this new approach provides a more comfortable (both for patients and clinical professionals), simpler, faster and lower-cost procedure than previous approaches, therefore providing a reliable tool to quantitatively analyze MOI patterns of epileptic seizures in the routine of EMUs around the world. We hope this study encourages other EMUs to adopt similar approaches so that more quantitative information is used to improve epilepsy diagnosis.

1 April 2019 in Journal of Biomechanics
Verified
Journal Article
Closed access
MVMaria do Carmo Vilas-Boas
Maria do Carmo Vilas-Boas
HCHugo Miguel Pereira Choupina
Hugo Miguel Pereira Choupina
ARAna Rocha
Ana Rocha
JFJM Fernandes
JM Fernandes
JCJoão Paulo Silva Cunha
João Paulo Silva Cunha

1 August 2014
Verified
Conference Paper
Closed access
ARAna Rocha
Ana Rocha
HCHugo Choupina
Hugo Choupina
JFJM Fernandes
JM Fernandes
MRMaria Jose Rosas
Maria Jose Rosas
RVRui Vaz
Rui Vaz
JCJoão Paulo Silva Cunha
João Paulo Silva Cunha
Movement-related diseases, such as Parkinson's disease (PD), progressively affect the motor function, many times leading to severe motor impairment and dramatic loss of the patients' quality of life. Human motion analysis techniques can be very useful to support clinical assessment of this type of diseases. In this contribution, we present a RGB-D camera (Microsoft Kinect) system and its evaluation for PD assessment. Based on skeleton data extracted from the gait of three PD patients treated with deep brain stimulation and three control subjects, several gait parameters were computed and analyzed, with the aim of discriminating between non-PD and PD subjects, as well as between two PD states (stimulator ON and OFF). We verified that among the several quantitative gait parameters, the variance of the center shoulder velocity presented the highest discriminative power to distinguish between non-PD, PD ON and PD OFF states (p = 0.004). Furthermore, we have shown that our low-cost portable system can be easily mounted in any hospital environment for evaluating patients' gait. These results demonstrate the potential of using a RGB-D camera as a PD assessment tool.

3 August 2018 in PLOS ONE
Verified
Journal Article
Open access
PDF file
ARAna Rocha
Ana Rocha
HCHugo Choupina
Hugo Choupina
MVMaria do Carmo Vilas-Boas
Maria do Carmo Vilas-Boas
JFJM Fernandes
JM Fernandes
JCJoão Paulo Silva Cunha
João Paulo Silva Cunha
Human gait analysis provides valuable information regarding the way of walking of a given subject. Low-cost RGB-D cameras, such as the Microsoft Kinect, are able to estimate the 3-D position of several body joints without requiring the use of markers. This 3-D information can be used to perform objective gait analysis in an affordable, portable, and non-intrusive way. In this contribution, we present a system for fully automatic gait analysis using a single RGB-D camera, namely the second version of the Kinect. Our system does not require any manual intervention (except for starting/stopping the data acquisition), since it firstly recognizes whether the subject is walking or not, and identifies the different gait cycles only when walking is detected. For each gait cycle, it then computes several gait parameters, which can provide useful information in various contexts, such as sports, healthcare, and biometric identification. The activity recognition is performed by a predictive model that distinguishes between three activities (walking, standing and marching), and between two postures of the subject (facing the sensor, and facing away from it). The model was built using a multilayer perceptron algorithm and several measures extracted from 3-D joint data, achieving an overall accuracy and F1 score of 98%. For gait cycle detection, we implemented an algorithm that estimates the instants corresponding to left and right heel strikes, relying on the distance between ankles, and the velocity of left and right ankles. The algorithm achieved errors for heel strike instant and stride duration estimation of 15 ± 25 ms and 1 ± 29 ms (walking towards the sensor), and 12 ± 23 ms and 2 ± 24 ms (walking away from the sensor). Our gait cycle detection solution can be used with any other RGB-D camera that provides the 3-D position of the main body joints.

1 August 2015
Verified
Conference Paper
Closed access
ARAna Rocha
Ana Rocha
HCHugo Choupina
Hugo Choupina
JFJM Fernandes
JM Fernandes
MRMaria Jose Rosas
Maria Jose Rosas
RVRui Vaz
Rui Vaz
JCJoão Paulo Silva Cunha
João Paulo Silva Cunha
Human motion analysis can provide valuable information for supporting the clinical assessment of movement disorders, such as Parkinson's disease (PD). In this contribution, we study the suitability of a Kinect v2 based system for supporting PD assessment in a clinical environment, in comparison to the original Kinect (v1). In this study, 3-D body joint data were acquired from both normal subjects, and PD patients treated with deep brain stimulation (DBS). Then, several gait parameters were extracted from the gathered data. The obtained results show that 96% of the considered parameters are appropriate for distinguishing between non-PD subjects, PD patients with DBS stimulator switched on, and PD patients with stimulator switched off (p-value <; 0.001, Kruskal-Wallis test). These results are markedly better than the ones obtained using Kinect v1, where only 73% of the parameters are considered appropriate (p-value <; 0.001).