Amir Akhgari

Dr. Amir Akhgari

orcid

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 November 2019 in Plants
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Journal Article
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AAAmir Akhgari
Amir Akhgari
ILInto Laakso
Into Laakso
HMHannu Maaheimo
Hannu Maaheimo
Young Hae ChoiYoung Hae Choi
Young Hae Choi
TSTuulikki Seppanen-Laakso
Tuulikki Seppanen-Laakso
Heiko RischerHeiko Rischer
Heiko Rischer
Methyl jasmonate is capable of initiating or improving the biosynthesis of secondary metabolites in plants and therefore has opened up a concept for the biosynthesis of valuable constituents. In this study, the effect of different doses of methyl jasmonate (MeJA) elicitation on the accumulation of terpenoid indole alkaloids (TIAs) in the hairy root cultures of the medicinal plant, Rhazya stricta throughout a time course (one-seven days) was investigated. Gas chromatography-mass spectrometry (GC-MS) analyses were carried out for targeted ten major non-polar alkaloids. Furthermore, overall alterations in metabolite contents in elicited and control cultures were investigated applying proton nuclear magnetic resonance (1H NMR) spectroscopy. Methyl jasmonate caused dosage- and time course-dependent significant rise in the accumulation of TIAs as determined by GC-MS. The contents of seven alkaloids including eburenine, quebrachamine, fluorocarpamine, pleiocarpamine, tubotaiwine, tetrahydroalstonine, and ajmalicine increased compared to non-elicited cultures. However, MeJA-elicitation did not induce the accumulation of vincanine, yohimbine (isomer II), and vallesiachotamine. Furthermore, principal component analysis (PCA) of 1H NMR metabolic profiles revealed a discrimination between elicited hairy roots and control cultures with significant increase in total vindoline-type alkaloid content and elevated levels of organic and amino acids. In addition, elicited and control samples had different sugar and fatty acid profiles, suggesting that MeJA also influences the primary metabolism of R. stricta hairy roots. It is evident that methyl jasmonate is applicable for elevating alkaloid accumulation in “hairy root” organ cultures of R. strica.

17 December 2015 in Molecules
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AAAmir Akhgari
Amir Akhgari
ILInto Laakso
Into Laakso
TSTuulikki Seppanen-Laakso
Tuulikki Seppanen-Laakso
TYTeijo Yrjönen
Teijo Yrjönen
HVHeikki Vuorela
Heikki Vuorela
Heiko RischerHeiko Rischer
Heiko Rischer
Rhazya stricta Decne. (Apocynaceae) contains a large number of terpenoid indole alkaloids (TIAs). This study focused on the composition of alkaloids obtained from transformed hairy root cultures of R. stricta employing ultra-performance liquid chromatography-mass spectrometry (UPLC-MS). In the UPLC-MS analyses, a total of 20 TIAs were identified from crude extracts. Eburenine and vincanine were the main alkaloids followed by polar glucoalkaloids, strictosidine lactam and strictosidine. Secodine-type alkaloids, tetrahydrosecodinol, tetrahydro- and dihydrosecodine were detected too. The occurrence of tetrahydrosecodinol was confirmed for the first time for R. stricta. Furthermore, two isomers of yohimbine, serpentine and vallesiachotamine were identified. The study shows that a characteristic pattern of biosynthetically related TIAs can be monitored in Rhazya hairy root crude extract by this chromatographic method.

6 July 2022 in Metabolic Engineering
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AAAmir Akhgari
Amir Akhgari
BBBikash Baral
Bikash Baral
AKArina Koroleva
Arina Koroleva
VSVilja Siitonen
Vilja Siitonen
DFDavid Fewer
David Fewer
MMMikko Metsä-Ketelä
Mikko Metsä-Ketelä
Actinomycetes are important producers of pharmaceuticals and industrial enzymes. However, wild type strains require laborious development prior to industrial usage. Here we present a generally applicable reporter-guided metabolic engineering tool based on random mutagenesis, selective pressure, and single-cell sorting. We developed fluorescence-activated cell sorting (FACS) methodology capable of reproducibly identifying high-performing individual cells from a mutant population directly from liquid cultures. Actinomycetes are an important source of catabolic enzymes, where product yields determine industrial viability. We demonstrate 5-fold yield improvement with an industrial cholesterol oxidase ChoD producer Streptomyces lavendulae to 20.4 U g-1 in three rounds. Strain development is traditionally followed by production medium optimization, which is a time-consuming multi-parameter problem that may require hard to source ingredients. Ultra-high throughput screening allowed us to circumvent medium optimization and we identified high ChoD yield production strains directly from mutant libraries grown under preset culture conditions. Genome-mining based drug discovery is a promising source of bioactive compounds, which is complicated by the observation that target metabolic pathways may be silent under laboratory conditions. We demonstrate our technology for drug discovery by activating a silent mutaxanthene metabolic pathway in Amycolatopsis. We apply the method for industrial strain development and increase mutaxanthene yields 9-fold to 99 mg l-1 in a second round of mutant selection. In summary, the ability to screen tens of millions of mutants in a single cell format offers broad applicability for metabolic engineering of actinomycetes for activation of silent metabolic pathways and to increase yields of proteins and natural products.

15 March 2017 in Biotechnology Letters
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AAAmir Akhgari
Amir Akhgari
Kirsi Marja OksmanKirsi Marja Oksman
Kirsi Marja Oksman
Heiko RischerHeiko Rischer
Heiko Rischer

18 December 2024 in Biocatalysis and Agricultural Biotechnology
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AAAmir Akhgari
Amir Akhgari
MSMaria Sulli
Maria Sulli
ARAnna Ramata-Stunda
Anna Ramata-Stunda
SHSuvi T. Häkkinen
Suvi T. Häkkinen
LNLiisa Nohynek
Liisa Nohynek
Heiko RischerHeiko Rischer
Heiko Rischer