Yaxiong Song

Mr. Yaxiong Song

orcid

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
28 October 2020 in Applied and Environmental Microbiology
Verified
Journal Article
Closed access
PDF file
TPTracey Lee Peters
Tracey Lee Peters
YSYaxiong Song
Yaxiong Song
DBDaniel W. Bryan
Daniel W. Bryan
Lauren K HudsonLauren K Hudson
Lauren K Hudson
TDThomas Denes
Thomas Denes
Listeria monocytogenesis a life-threatening bacterial foodborne pathogen that can persist in food processing facilities for years. Phages can be used to controlL. monocytogenesin food production, but phage-resistant bacterial subpopulations can regrow in phage-treated environments. Coevolution experiments were conducted on aListeriaphage-host system to provide insight into the genetic variation that emerges in both the phage and bacterial host under reciprocal selective pressure. As expected, mutations were identified in both phage and host, but additionally, recombination events were shown to have repeatedly occurred between closely related phages that coinfectedL. monocytogenes. This study demonstrates thatin vitroevolution of phages can be utilized to expand the host range and improve the long-term efficacy of phage-based control ofL. monocytogenes. This approach may also be applied to other phage-host systems for applications in biocontrol, detection, and phage therapy.

14 April 2021 in Viruses
Verified
Journal Article
Open access
PDF file
YSYaxiong Song
Yaxiong Song
TPTracey Lee Peters
Tracey Lee Peters
DBDaniel Bryan
Daniel Bryan
Lauren K HudsonLauren K Hudson
Lauren K Hudson
TDThomas Denes
Thomas Denes
Listeria monocytogenes serotype 4b strains are the most prevalent clinical isolates and are widely found in food processing environments. Bacteriophages are natural viral predators of bacteria and are a promising biocontrol agent for L. monocytogenes. The aims of this study were to characterize phages that specifically infect serotype 4b strains and to assess their ability to inhibit the growth of serotype 4b strains. Out of 120 wild Listeria phages, nine phages were selected based on their strong lytic activity against the model serotype 4b strain F2365. These nine phages can be divided into two groups based on their morphological characteristics and host range. Comparison to previously characterized phage genomes revealed one of these groups qualifies to be defined as a novel species. Phages LP-020, LP-027, and LP-094 were selected as representatives of these two groups of phages for further characterization through one-step growth curve and inhibition of serotype 4b L. monocytogenes experiments. Listeria phages that target serotype 4b showed an inhibitory effect on the growth of F2365 and other serotype 4 strains and may be useful for biocontrol of L.monocytogenes in food processing environments.

17 December 2019 in Viruses
Verified
Journal Article
Open access
PDF file
YSYaxiong Song
Yaxiong Song
TPTracey Lee Peters
Tracey Lee Peters
DBDaniel Bryan
Daniel Bryan
Lauren K HudsonLauren K Hudson
Lauren K Hudson
TDThomas Denes
Thomas Denes
Listeria phage LP-018 is the only phage from a diverse collection of 120 phages able to form plaques on a phage-resistant Listeria monocytogenes strain lacking rhamnose in its cell wall teichoic acids. The aim of this study was to characterize phage LP-018 and to identify what types of mutations can confer resistance to LP-018. Whole genome sequencing and transmission electron microscopy revealed LP-018 to be a member of the Homburgvirus genus. One-step-growth curve analysis of LP-018 revealed an eclipse period of ~60–90 min and a burst size of ~2 PFU per infected cell. Despite slow growth and small burst size, LP-018 can inhibit the growth of Listeria monocytogenes at a high multiplicity of infection. Ten distinct LP-018-resistant mutants were isolated from infected Listeria monocytogenes 10403S and characterized by whole genome sequencing. In each mutant, a single mutation was identified in either the LMRG_00278 or LMRG_01613 encoding genes. Interesting, LP-018 was able to bind to a representative phage-resistant mutant with a mutation in each gene, suggesting these mutations confer resistance through a mechanism independent of adsorption inhibition. Despite forming plaques on the rhamnose deficient 10403S mutant, LP-018 showed reduced binding efficiency, and we did not observe inhibition of the strain under the conditions tested. Two mutants of LP-018 were also isolated and characterized, one with a single SNP in a gene encoding a BppU domain protein that likely alters its host range. LP-018 is shown to be a unique Listeria phage that, with additional evaluation, may be useful in biocontrol applications that aim to reduce the emergence of phage resistance.

28 September 2024 in Foods
Verified
Journal Article
Open access
PDF file
YSYaxiong Song
Yaxiong Song
WGWentao Gu
Wentao Gu
YHYaozhong Hu
Yaozhong Hu
BZBowei Zhang
Bowei Zhang
Jin WangJin Wang
Jin Wang
SWShuo Wang
Shuo Wang
Foodborne pathogens, such as Salmonella, are major factors that pose significant threats to global food safety and public health. Salmonella typhimurium is a prominent serotype contributing to non-typhoidal salmonellosis, which is a prevalent foodborne illness affecting humans and animals. Bacteriophages are considered one of the most environmentally friendly biocontrol agents, particularly in the food industry, owing to their high specificity and high safety. However, the emergency of phage-resistant mutants limits the biocontrol effect of phage treatment, leading to the requirement for a high diversity of lytic phages. Therefore, the study isolated and characterized two novel lytic Salmonella bacteriophages (SPYS_1 and SPYS_2) targeting S. typhimurium ATCC14028 and evaluated their effectiveness in reducing the contamination rates for milk and chicken tenders. Morphological and genomic analyses indicated that Salmonella phages SPYS_1 and SPYS_2 are novel species classified under the genus Skatevirus and the genus Berlinvirus, respectively. Both phages exhibited high stability across a broad range of thermal and pH conditions. The one-step growth curve result suggested that both phages had a short adsorption time and a large burst size in a single lytic cycle. The phage SPYS_1 demonstrated a noteworthy inhibition effect on the growth of S. typhimurium ATCC14028 in milk, resulting in a ~2-log reduction within the 2 to 4 h range. Overall, both phages have shown significant potential for application in food safety in the future.

14 November 2019 in Microbiology Resource Announcements
Verified
Journal Article
Open access
PDF file
TPTracey Lee Peters
Tracey Lee Peters
Lauren K HudsonLauren K Hudson
Lauren K Hudson
YSYaxiong Song
Yaxiong Song
TDThomas Denes
Thomas Denes
Bacteriophages isolated from environmental sources can be used as a biocontrol against the foodborne pathogen Listeria monocytogenes . Here, we present the complete genomes of LP-039 and LP-066, two Pecentumvirus bacteriophages that infect L. monocytogenes . The genome sizes of LP-039 and LP-066 are 136.2 kb and 139.0 kb, respectively.

9 September 2016 in Journal of the World Aquaculture Society
Verified
Journal Article
Closed access
PDF file
ZLZhen Li
Zhen Li
YSYaxiong Song
Yaxiong Song
XWXitao Wang
Xitao Wang
JZJiancheng Zhang
Jiancheng Zhang
LWLili Wang
Lili Wang
YXYongping Xu
Yongping Xu