Highlights A novel pixel-based calibration algorithm and an atmospheric correction method are developed. Application of the calibration methods reduces the RMSE of measurements to less than 1.32°C. The calibrations facilitate stitching of images together to form whole-field mosaics. Abstract. Thermal imagery can be used to provide insight into the water stress status and evapotranspiration demand of crops, but satellite-based sensors are generally too coarse spatially and too infrequent temporally to provide information of use for the management of specific fields. Thermal cameras mounted on small unmanned aerial systems (UAS) have potential to provide canopy temperature information at high spatial and temporal resolutions useful for crop management; however, without appropriate camera corrections, the measurement biases of these uncooled thermal cameras can be larger than ±5°C. Such uncertainty can render such camera measurements useless. In this research, a pixel-based (non-uniformity) calibration algorithm and an atmospheric correction method based on in-field approximate blackbody sources (water targets) were developed for a thermal camera. The objective was to improve the temperature measurement accuracy of the thermal camera on various land surfaces including soil and vegetation. With sufficient accuracy, temperature measurements can be used for the estimation of latent heat flux of field crops in the future. The thermal camera was first calibrated in a laboratory setting where the camera and environmental conditions were controlled. The results indicated that in the range between 10°C and 45°C, the calibrated temperatures were accurate, with an average bias of 1.76°C, and had a high linear correlation with reference temperatures (water target temperatures) (R2 > 0.99). Variability of measurements was also better constrained. In-field atmospheric correction is also important for obtaining high-accuracy thermal imagery. By applying both pixel-based calibration and atmospheric corrections, the RMSE (root mean square error) of validation targets from two dates in 2017 was reduced from 4.56°C and 6.36°C before calibration to 1.32°C and 1.24°C after calibration. The calibration process also increased the range of temperatures in the imagery, which enhanced contrast and may help with identification of tie-points and stitching of images together to form whole-field mosaics. Keywords: Atmospheric correction, Pixel-based calibration, Thermal remote sensing, UAS, Water targets.

We introduce a method to calculate evapotranspiration (ET) for individual plots in agricultural fields using the TSEB (Two-Source Energy Balance) model for high resolution thermal data from a UAS (unmanned aerial system). The model was developed for satellite remote sensing which has coarser spatial and temporal resolution. With the emergence of UAS remote sensing, this model needs to be adapted to be applied to the significantly higher resolution imagery. The average resolution of our thermal dataset is about 5 cm, which means we have multiple temperature measurements for a single plant, as opposed to satellite imagery which often views entire fields. The image resolution also means that soil contributes to overall temperature for certain pixels as well. A new algorithm is developed to classify pixels into 3 categories: soil, plant and mixture of soil and plant. Temperature distributions of plants are established and with other inputs like solar radiation, wind speed, plant height, we estimate ET distributions. Distributions of ET are acquired for the targeted plots in multiple images, and are evaluated versus stomatal conductance measurements from a steady state porometer.

Crop evapotranspiration (ET), which is directly related to latent heat flux, is also a key indicator in determining the water status of crops. In order to estimate the latent heat flux, two-source energy balance (TSEB) models have been developed for thermal imagery from satellite platforms. However, because of the coarse resolution of thermal sensors on the satellite, distinguishing soil and vegetation is difficult which complicates the calculation process and introduces errors in latent heat estimates. In this research, high-resolution thermal datasets (0.05 m) and corresponding RGB datasets (0.03 m) were used for calculating crop latent heat flux using an adapted TSEB model. The RGB datasets were used for supervised classification of soil and vegetation, and the classification results were then used to filter the thermal mosaics to separate vegetation and soil temperatures. The vegetation temperature is used for calculating latent heat flux and the results are validated against the ground reference measurements of latent heat using a handheld porometer. The objective of this research is to introduce a workflow including an adapted TSEB model which is customized for high resolution thermal images from unmanned aircraft systems (UAS) to estimate the latent heat flux of row crops in agricultural fields. Nine dates of data collection in 2018 and 2020 have been evaluated and the root mean square error (RMSE) varies between 16 to 106 W/m² depending on the days after planting (DAP) and the time of measurement for each day. The results indicate that the workflow introduced here is able to provide estimates of instantaneous latent heat flux (evapotranspiration) measurements for row crops in agricultural fields which will enable people to make reliable decisions related to irrigation scheduling.