Joana Rocha

Mrs. Joana Rocha


Research Focus & Metrics

Academic Career Length

19Years (2008-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 March 2020 in International Journal of Systematic and Evolutionary Microbiology
Verified
Journal Article
Open access
JRJoana Rocha
Joana Rocha
João BotelhoJoão Botelho
João Botelho
MKMagdalena Ksiezarek
Magdalena Ksiezarek
SPSvetlana Ugarcina Perovic
Svetlana Ugarcina Perovic
MMMiguel Machado
Miguel Machado
LPLuísa Peixe
Luísa Peixe
One Gram-stain-positive, non-motile, non-spore-forming, catalase-negative, and coccobacilli-shaped strain, designated c10Ua161MT, was isolated from a urine sample from a reproductive-age healthy woman. Comparative 16S rRNA gene sequence analysis indicated that strain c10Ua161MT belonged to the genus Lactobacillus . Phylogenetic analysis based on pheS and rpoA gene sequences strongly supported a clade encompassing strains c10Ua161MT and eight other strains from public databases, distinct from currently recognized species of the genus Lactobacillus. In silico Average Nucleotide Identity (ANI) and Genome-to-Genome Distance Calculator (GGDC), showed 87.9 and 34.3 % identity to the closest relative Lactobacillus jensenii , respectively. The major fatty acids of strain c10Ua161MT were C18 : 1ω9c (65.0%), C16 : 0 (17.8%), and summed feature 8 (10.2 %; comprising C18 : 1ω7c, and/or C18 : 1ω6c). The DNA G+C content of the strains is 34.2 mol%. On the basis of data presented here, strain c10Ua161MT represents a novel species of the genus Lactobacillus , for which the name Lactobacillus mulieris sp. nov. is proposed. The type strain is c10Ua161MT (=CECT 9755T=DSM 108704T).

24 December 2008 in Journal of Antimicrobial Chemotherapy
Verified
Journal Article
Open access
PDF file
EMElisabete Machado
Elisabete Machado
TCTeresa M. Coque
Teresa M. Coque
RCRafael Canton
Rafael Canton
JSJoão Carlos Sousa
João Carlos Sousa
DSDiana Silva
Diana Silva
LPLuísa Peixe
Luísa Peixe

26 April 2011 in Tropical Animal Health and Production
Verified
Journal Article
Closed access
PDF file
JRJoana Rocha
Joana Rocha
SCShanyuan Chen
Shanyuan Chen
Albano Beja-PereiraAlbano Beja-Pereira
Albano Beja-Pereira

11 November 2014 in Scientific Reports
Verified
Journal Article
Open access
JRJoana Rocha
Joana Rocha
FCFrancisco J. R. C. Coelho
Francisco J. R. C. Coelho
LPLuísa Peixe
Luísa Peixe
NGNewton Gomes
Newton Gomes
Ricardo CaladoRicardo Calado
Ricardo Calado
For several years, knowledge on the microbiome associated with marine invertebrates was impaired by the challenges associated with the characterization of bacterial communities. With the advent of culture independent molecular tools it is possible to gain new insights on the diversity and richness of microorganisms associated with marine invertebrates. In the present study, we evaluated if different preservation and processing methodologies (prior to DNA extraction) can affect the bacterial diversity retrieved from snakelocks anemone Anemonia viridis. Denaturing gradient gel electrophoresis (DGGE) community fingerprints were used as proxy to determine the bacterial diversity retrieved (H[prime]). Statistical analyses indicated that preservation significantly affects H[prime]. The best approach to preserve and process A. viridis biomass for bacterial community fingerprint analysis was flash freezing in liquid nitrogen (preservation) followed by the use of a mechanical homogenizer (process), as it consistently yielded higher H[prime]. Alternatively, biomass samples can be processed fresh followed by cell lyses using a mechanical homogenizer or mortar & pestle. The suitability of employing these two alternative procedures was further reinforced by the quantification of the 16S rRNA gene; no significant differences were recorded when comparing these two approaches and the use of liquid nitrogen followed by processing with a mechanical homogenizer.

6 June 2019 in International Journal of Systematic and Evolutionary Microbiology
Verified
Journal Article
Open access
MKMagdalena Ksiezarek
Magdalena Ksiezarek
Teresa Gonçalves RibeiroTeresa Gonçalves Ribeiro
Teresa Gonçalves Ribeiro
JRJoana Rocha
Joana Rocha
FGFilipa Grosso
Filipa Grosso
SPSvetlana Ugarcina Perovic
Svetlana Ugarcina Perovic
LPLuísa Peixe
Luísa Peixe
Two Gram-stain-positive strains, c9Ua_26_MTand c11Ua_112_MT, were isolated from voided urine samples from two healthy women. Comparative 16S rRNA gene sequences demonstrated that these novel strains were members of the genusLimosilactobacillus. Phylogenetic analysis based onpheSgene sequences and core genomes showed that each strain formed a separated branch and are closest toLimosilactobacillus vaginalisDSM 5837T. The average nucleotide identity (ANI) and Genome-to-Genome Distance Calculator (GGDC) values between c9Ua_26_MTand the closest relative DSM 5837Twere 90.7 and 42.9 %, respectively. The ANI and GGDC values between c11Ua_112_MTand the closest relative DSM 5837Twere 91.2 and 45.0 %, and those among the strains were 92.9% and 51,0 %, respectively. The major fatty acids were C12 : 0(40.2 %), C16 : 0(26.7 %) and C18 : 1ω9c(17.7 %) for strain c9Ua_26_MT, and C18 : 1ω9c(38.0 %), C16 : 0(33.3 %) and C12 : 0(17.6 %) for strain c11Ua_112_MT. The genomic DNA G+C content of strains c9Ua_26_MTand c11Ua_112_MTwas 39.9 and 39.7 mol%, respectively. On the basis of the data presented here, strains c9Ua_26_MTand c11Ua_112_MTrepresent two novel species of the genusLimosilactobacillus, for which the namesLimosilactobacillus urinaemulierissp. nov. (c9Ua_26_MT=CECT 30144T=LMG 31899T) andLimosilactobacillus portuensissp. nov. (c11Ua_112_MT=CECT 30145T=LMG 31898T) are proposed.

1 January 2015
Verified
Book Chapter
Closed access
PDF file
JRJoana Rocha
Joana Rocha
Ricardo CaladoRicardo Calado
Ricardo Calado
MLMiguel Leal
Miguel Leal