Chen Chen

Dr. Chen Chen

Nanjing Forestry University
orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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Verified
Journal Article
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LNLongJie Ni
LongJie Ni
ZWZhiquan Wang
Zhiquan Wang
ZFZekai Fu
Zekai Fu
CCChen Chen
Chen Chen
YYYunlong Yin
Yunlong Yin
CGChunsun Gu
Chunsun Gu
The basic helix-loop-helix (bHLH) family of transcription factors is one of the most significant and biggest in plants. It is involved in the regulation of both growth and development, as well as stress response. Numerous members of the bHLH family have been found and characterized in woody plants in recent years. However, no systematic study of the bHLH gene family has been published for Hibiscus hamabo Sieb. et Zucc. In this research, we identified 162 bHLH proteins (HhbHLHs) from the genomic and transcriptomic datasets of H. hamabo, which were phylogenetically divided into 19 subfamilies. According to a gene structural study, the number of exon-introns in HhbHLHs varied between zero and seventeen. MEME research revealed that the majority of HhbHLH proteins contained three conserved motifs, 1, 4, and 5. The examination of promoter cis-elements revealed that the majority of HhbHLH genes had several cis-elements involved in plant growth and development and abiotic stress responses. In addition, the overexpression of HhbHLH2 increased salt and drought stress tolerance in Arabidopsis.

18 March 2020 in BMC Plant Biology
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QWQIKUI WU
QIKUI WU
YCYuanyuan Cao
Yuanyuan Cao
CCChen Chen
Chen Chen
ZGZhenzhou Gao
Zhenzhou Gao
FYFangyuan Yu
Fangyuan Yu
RGRobert D. Guy
Robert D. Guy
Background: Styrax tonkinensis (Pierre) Craib ex Hartwich has great potential as a woody biodiesel species having seed kernels with high oil content, excellent fatty acid composition and good fuel properties. However, no transcriptome information is available on the molecular regulatory mechanism of oil accumulation in developing S. tonkinensis kernels. Results: The dynamic patterns of oil content and fatty acid composition at 11 time points from 50 to 150 days after flowering (DAF) were analyzed. The percent oil content showed an up-down-up pattern, with yield and degree of unsaturation peaking on or after 140 DAF. Four time points (50, 70, 100, and 130 DAF) were selected for Illumina transcriptome sequencing. Approximately 73 million high quality clean reads were generated, and then assembled into 168,207 unigenes with a mean length of 854 bp. There were 5916 genes that were differentially expressed between different time points. These differentially expressed genes were grouped into 9 clusters based on their expression patterns. Expression patterns of a subset of 12 unigenes were confirmed by qRT-PCR. Based on their functional annotation through the Basic Local Alignment Search Tool and publicly available protein databases, specific unigenes encoding key enzymes, transmembrane transporters, and transcription factors associated with oil accumulation were determined. Three main patterns of expression were evident. Most unigenes peaked at 70 DAF, coincident with a rapid increase in oil content during kernel development. Unigenes with high expression at 50 DAF were associated with plastid formation and earlier stages of oil synthesis, including pyruvate and acetyl-CoA formation. Unigenes associated with triacylglycerol biosynthesis and oil body development peaked at 100 or 130 DAF. Conclusions: Transcriptome changes during oil accumulation show a distinct temporal trend with few abrupt transitions. Expression profiles suggest that acetyl-CoA formation for oil biosynthesis is both directly from pyruvate and indirectly via acetaldehyde, and indicate that the main carbon source for fatty acid biosynthesis is triosephosphate originating from phosphohexose outside the plastid. Different sn-glycerol-3-phosphate acyltransferases are implicated in diacylglycerol biosynthesis at early versus late stages of oil accumulation. Triacylglycerol biosynthesis may be accomplished by both diacylglycerol and by phospholipid:diacylglycerol acyltransferases.

1 January 2020 in Metabolites
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QWQIKUI WU
QIKUI WU
XZXue Zhao
Xue Zhao
CCChen Chen
Chen Chen
ZZZihan Zhang
Zihan Zhang
FYFangyuan Yu
Fangyuan Yu
Background: Styrax tonkinensis is an economic tree species with high timber, medicine, oil, and ornamental value. Its seed, containing a particularly high oil content, are widely studied for their biodiesel properties by nutritional components and oil body ultrastructure. However, their comprehensive biochemical compositions have not been studied. Methods: During S. tonkinensis kernel development, we collected samples from four time points for metabolite profiling and classification through gas chromatography-mass spectrometry and liquid chromatography-mass spectrometry. Results: A total of 187 and 1556 metabolites were obtained, respectively. All of the metabolites were grouped into 19 and 21 classes by their chemical properties and into 8 clusters based on their change trends, respectively. Among all the metabolites, carboxylic acids and derivatives, flavonoids, fatty acyls, glycerophospholipids, organooxygen compounds, prenol lipids, and steroids and steroid derivatives were the main components. Alanine, glutamine, tryptophan, tyrosine and valine were the five most abundant amino acids. Palmitic acid, stearic acid, oleic acid and linoleic acid were the four major free fatty acids. Flavans, flavonoid glycosides and o-methylated flavonoids were the three major flavonoids. The differential metabolites distributions between different time points were identified. A pathway enrichment was performed, which was mainly focused on three groups, amino acids metabolism, carbon flow from sucrose to lipid and secondary metabolites biosynthesis. Conclusions: It’s the first time to analyze the metabolite fingerprinting for developing S. tonkinensis kernels and identify varied kinds of flavonoids. We performed metabolite profiling, classification and pathway enrichment to assess the comprehensive biochemical compositions. Our results described the change in major metabolites and main metabolic processes during S. tonkinensis kernel development and provided a variety of bases for seed applications as biofuel or medicine.

Verified
Journal Article
Open access
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ZWZhiquan Wang
Zhiquan Wang
LNLongJie Ni
LongJie Ni
CCChen Chen
Chen Chen
ZFZekai Fu
Zekai Fu
JHJianfeng Hua
Jianfeng Hua
CGChunsun Gu
Chunsun Gu
NAC transcription factor is one of the largest plant gene families, participating in the regulation of plant biological and abiotic stresses. In this study, 182 NAC proteins (HhNACs) were identified based on genomic datasets of Hibiscus hamabo Sieb. et Zucc (H. hamabo). These proteins were divided into 19 subfamilies based on their phylogenetic relationship, motif pattern, and gene structure analysis. Expression analysis with RNA-seq revealed that most HhNACs were expressed in response to drought and salt stress. Research of quantitative real-time PCR analysis of nine selected HhNACs supported the transcriptome data’s dependability and suggested that HhNAC54 was significantly upregulated under multiple abiotic stresses. Overexpression of HhNAC54 in Arabidopsis thaliana (A. thaliana) significantly increased its tolerance to salt. This study provides a basis for a comprehensive analysis of NAC transcription factor and insight into the abiotic stress response mechanism in H. hamabo.

28 July 2021 in Agronomy
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CCChen Chen
Chen Chen
HCHong Chen
Hong Chen
MNMing Ni
Ming Ni
FYFangyuan Yu
Fangyuan Yu
Styrax japonicus is a small ornamental tree with medicinal values, although its flowering period is short. To date, information about the morphological and physiological characteristics of the petals during the flowering period is limited. In this study, we observed the structure of the petals at the full flowering stage with a scanning electron microscope and detected the contents of nutrients, minerals, and endogenous hormones and the activities of enzymes at different flowering stages. The results showed that the content of soluble sugar exhibited an ‘increase-decrease’ trend, whereas the contents of soluble protein, nitrogen (N), phosphorus (P), and abscisic acid (ABA) showed a ‘decrease-increase’ pattern. The content of starch descended continuously, but the contents of potassium (K), gibberellic acid (GA3), indoleacetic acid (IAA), and malondialdehyde (MDA) ascended continuously. The activities of peroxidase (POD) and superoxide dismutase (SOD) first rose and then declined during the flowering period. Higher contents of soluble sugar, N, K, and IAA promoted S. japonicus flowering; meanwhile, lower contents of starch, soluble protein, P, and GA3 in addition to the lower activity of SOD might be some of the causes of the short flowering period. This work will serve as the foundation for a scientific technique to utilize the flowers and extend the flowering period in S. japonicus.

27 June 2024 in Horticulturae
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Journal Article
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CCChen Chen
Chen Chen
HCHong Chen
Hong Chen
KYKaibo Yang
Kaibo Yang
Jasminum sambac is an excellent ornamental species that is renowned worldwide for its pure white flowers and strong fragrance. However, its intolerance to low temperatures limits its cultivation range. Methyl jasmonate (MeJA), an essential plant growth regulator, plays a significant role in assisting plants to resist various stresses. Hence, this study was carried out to decipher the capabilities of diverse concentrations of MeJA in helping J. sambac to resist cold stress by measuring different physiological indexes. A normal temperature (15 °C/10 °C) and low temperature (7 °C/2 °C) were applied to J. sambac seedlings, and a one-way analysis of variance followed by a Duncan’s multiple range test was adopted to compare the differences between the indicators under 5 μmol·L−1, 10 μmol·L−1 and 20 μmol·L−1 of MeJA treatments. The results showed that cold stress significantly decreased the contents of soluble sugar and soluble protein, while the application of MeJA at 10 μmol·L−1 and 20 μmol·L−1 resulted in a partial recovery. In addition, cold stress dramatically hindered the accumulation of total chlorophyll in leaves. Exogenous MeJA elevated the total chlorophyll content during the whole sampling period. The hydrogen peroxide and malondialdehyde levels generally increased in response to low temperatures, and they caused adverse effects on J. sambac, whereas this was effectively alleviated through the application of MeJA. MeJA was also able to improve the resistance of J. sambac by boosting the activity of antioxidant enzymes to remove the excess of reactive oxygen species. In conclusion, we highlighted that exogenous MeJA could attenuate the negative consequences of cold stress for J. sambac, and 10 μmol·L−1 of MeJA treatment could be a feasible strategy for enhancing the resistance of J. sambac to low temperatures and promoting its growth.