Panagiotis Barmpoutis

Dr. Panagiotis Barmpoutis

Department of Computer Science, Faculty of Engineering Science, University College, London WC1E 6BT, UK
orcid

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
11 November 2020 in Sensors
Verified
Journal Article
Open access
PDF file
Panagiotis BarmpoutisPanagiotis Barmpoutis
Panagiotis Barmpoutis
PPPeriklis Papaioannou
Periklis Papaioannou
Kosmas DimitropoulosKosmas Dimitropoulos
Kosmas Dimitropoulos
NGNikos GRAMMALIDIS
Nikos GRAMMALIDIS
The environmental challenges the world faces nowadays have never been greater or more complex. Global areas covered by forests and urban woodlands are threatened by natural disasters that have increased dramatically during the last decades, in terms of both frequency and magnitude. Large-scale forest fires are one of the most harmful natural hazards affecting climate change and life around the world. Thus, to minimize their impacts on people and nature, the adoption of well-planned and closely coordinated effective prevention, early warning, and response approaches are necessary. This paper presents an overview of the optical remote sensing technologies used in early fire warning systems and provides an extensive survey on both flame and smoke detection algorithms employed by each technology. Three types of systems are identified, namely terrestrial, airborne, and spaceborne-based systems, while various models aiming to detect fire occurrences with high accuracy in challenging environments are studied. Finally, the strengths and weaknesses of fire detection systems based on optical remote sensing are discussed aiming to contribute to future research projects for the development of early warning fire systems.

28 September 2020 in Remote Sensing
Verified
Journal Article
Open access
PDF file
Panagiotis BarmpoutisPanagiotis Barmpoutis
Panagiotis Barmpoutis
Tania  StathakiTania Stathaki
Tania Stathaki
Kosmas DimitropoulosKosmas Dimitropoulos
Kosmas Dimitropoulos
NGNikos GRAMMALIDIS
Nikos GRAMMALIDIS
The environmental challenges the world faces have never been greater or more complex. Global areas that are covered by forests and urban woodlands are threatened by large-scale forest fires that have increased dramatically during the last decades in Europe and worldwide, in terms of both frequency and magnitude. To this end, rapid advances in remote sensing systems including ground-based, unmanned aerial vehicle-based and satellite-based systems have been adopted for effective forest fire surveillance. In this paper, the recently introduced 360-degree sensor cameras are proposed for early fire detection, making it possible to obtain unlimited field of view captures which reduce the number of required sensors and the computational cost and make the systems more efficient. More specifically, once optical 360-degree raw data are obtained using an RGB 360-degree camera mounted on an unmanned aerial vehicle, we convert the equirectangular projection format images to stereographic images. Then, two DeepLab V3+ networks are applied to perform flame and smoke segmentation, respectively. Subsequently, a novel post-validation adaptive method is proposed exploiting the environmental appearance of each test image and reducing the false-positive rates. For evaluating the performance of the proposed system, a dataset, namely the “Fire detection 360-degree dataset”, consisting of 150 unlimited field of view images that contain both synthetic and real fire, was created. Experimental results demonstrate the great potential of the proposed system, which has achieved an F-score fire detection rate equal to 94.6%, hence reducing the number of required sensors. This indicates that the proposed method could significantly contribute to early fire detection.

23 September 2021 in PLOS ONE
Verified
Journal Article
Open access
PDF file
Panagiotis BarmpoutisPanagiotis Barmpoutis
Panagiotis Barmpoutis
MCMatthew Di Capite
Matthew Di Capite
HKHamzeh Kayhanian
Hamzeh Kayhanian
WWWilliam Waddingham
William Waddingham
DADaniel C. Alexander
Daniel C. Alexander
FKFrancois Ng Kee Kwong
Francois Ng Kee Kwong
Tertiary lymphoid structures (TLS) are ectopic aggregates of lymphoid cells in inflamed, infected, or tumoral tissues that are easily recognized on an H&E histology slide as discrete entities, distinct from lymphocytes. TLS are associated with improved cancer prognosis but there is no standardised method available to quantify their presence. Previous studies have used immunohistochemistry to determine the presence of specific cells as a marker of the TLS. This has now been proven to be an underestimate of the true number of TLS. Thus, we propose a methodology for the automated identification and quantification of TLS, based on H&E slides. We subsequently determined the mathematical criteria defining a TLS. TLS regions were identified through a deep convolutional neural network and segmentation of lymphocytes was performed through an ellipsoidal model. This methodology had a 92.87% specificity at 95% sensitivity, 88.79% specificity at 98% sensitivity and 84.32% specificity at 99% sensitivity level based on 144 TLS annotated H&E slides implying that the automated approach was able to reproduce the histopathologists’ assessment with great accuracy. We showed that the minimum number of lymphocytes within TLS is 45 and the minimum TLS area is 6,245μm2. Furthermore, we have shown that the density of the lymphocytes is more than 3 times those outside of the TLS. The mean density and standard deviation of lymphocytes within a TLS area are 0.0128/μm2and 0.0026/μm2respectively compared to 0.004/μm2and 0.001/μm2in non-TLS regions. The proposed methodology shows great potential for automated identification and quantification of the TLS density on digital H&E slides.

1 January 2018 in Computers and Electronics in Agriculture
Verified
Journal Article
Closed access
Panagiotis BarmpoutisPanagiotis Barmpoutis
Panagiotis Barmpoutis
Kosmas DimitropoulosKosmas Dimitropoulos
Kosmas Dimitropoulos
IBIoannis Barboutis
Ioannis Barboutis
NGNikos GRAMMALIDIS
Nikos GRAMMALIDIS
PLPanagiotis Lefakis
Panagiotis Lefakis

1 July 2019 in Biomedical Signal Processing and Control
Verified
Journal Article
Open access
Panagiotis BarmpoutisPanagiotis Barmpoutis
Panagiotis Barmpoutis
Kosmas DimitropoulosKosmas Dimitropoulos
Kosmas Dimitropoulos
AAAnestis Apostolidis
Anestis Apostolidis
NGNikos GRAMMALIDIS
Nikos GRAMMALIDIS
Background and objective: Electrocardiogram is commonly used as a diagnostic tool for the monitoring of cardiac health and the detection of possible heart diseases. However, the procedure followed for the diagnosis of heart abnormalities is time consuming and prone to human errors. Thus, the development of computer-aided techniques for the automatic analysis of electrocardiogram signals is of vital importance for the diagnosis and prevention of heart diseases. The most serious outcome of coronary heart disease is the myocardial infarction, i.e., the rapid and irreversible damage of cardiac muscles, which, if not diagnosed and treated in time, continues to damage further the myocardial structure and function. In this paper we propose a novel approach for the automatic detection and localization of myocardial infarction from multi-lead electrocardiogram signals. Methods: The proposed method initially reshapes the multidimensional signal into a third-order tensor structure and subsequently extracts feature representations in both Euclidean and Grassmannian space. In addition, two different methods are proposed for the mapping of the two different feature representations into a common Hilbert space before the final classification of signals. The first approach is based on the mapping of both Grassmannian and Euclidean features in a Reproducing Kernel Hilbert Space (RKHS), while the second one attempts to initially apply Vector of Locally Aggregated Descriptors (VLAD) encoding directly to Grassmann manifold and then concatenate the two VLAD representations. Results: For the evaluation of the proposed method, we have conducted extensive tests using a publicly available dataset, namely PTB Diagnostic ECG database, containing 549 multi-lead ECG data recordings from 290 subjects and from different diagnostic classes. The method provides an excellent detection rate of 100%, and localization rate, i.e., 100% with the first fusion method and 99.7% with the second one. Conclusions: The Experimental results presented in this paper show the superiority of the proposed methodology against a number of state-of-the-art approaches. The main advantage of the proposed approach is that it exploits better the intercorrelations between signals of different ECG leads, by extracting feature representations that lie in different geometrical spaces and contain complementary information with regard to the dynamics of signals. (C) 2019 Elsevier Ltd. All rights reserved.

3 July 2024 in Nature Genetics
Verified
Journal Article
Open access
PDF file
HKHamzeh Kayhanian
Hamzeh Kayhanian
WCWilliam Cross
William Cross
SHSuzanne E. M. van der Horst
Suzanne E. M. van der Horst
Panagiotis BarmpoutisPanagiotis Barmpoutis
Panagiotis Barmpoutis
ELEszter Lakatos
Eszter Lakatos
MJMarnix Jansen
Marnix Jansen
Mismatch repair (MMR)-deficient cancer evolves through the stepwise erosion of coding homopolymers in target genes. Curiously, the MMR genes MutS homolog 6 (MSH6) and MutS homolog 3 (MSH3) also contain coding homopolymers, and these are frequent mutational targets in MMR-deficient cancers. The impact of incremental MMR mutations on MMR-deficient cancer evolution is unknown. Here we show that microsatellite instability modulates DNA repair by toggling hypermutable mononucleotide homopolymer runs in MSH6 and MSH3 through stochastic frameshift switching. Spontaneous mutation and reversion modulate subclonal mutation rate, mutation bias and HLA and neoantigen diversity. Patient-derived organoids corroborate these observations and show that MMR homopolymer sequences drift back into reading frame in the absence of immune selection, suggesting a fitness cost of elevated mutation rates. Combined experimental and simulation studies demonstrate that subclonal immune selection favors incremental MMR mutations. Overall, our data demonstrate that MMR-deficient colorectal cancers fuel intratumor heterogeneity by adapting subclonal mutation rate and diversity to immune selection.