Amarnath Natarajan

Dr. Amarnath Natarajan

orcid

Research Focus & Metrics

Academic Career Length

27Years (2000-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2013 in Biochimica et Biophysica Acta (BBA) - Molecular Cell Research
Verified
Journal Article
Closed access
BMBhopal Mohapatra
Bhopal Mohapatra
GAGulzar Ahmad
Gulzar Ahmad
SNScott Nadeau
Scott Nadeau
NZNeha Zutshi
Neha Zutshi
WAWei An
Wei An
HBHamid Band
Hamid Band

20 September 2017 in Journal of Materials Chemistry B
Verified
Journal Article
Closed access
PDF file
DBD. S. Bhattacharya
D. S. Bhattacharya
DSD. Svechkarev
D. Svechkarev
JSJ. J. Souchek
J. J. Souchek
THT. K. Hill
T. K. Hill
MTM. A. Taylor
M. A. Taylor
AMAaron Mohs
Aaron Mohs
CD44 is a widely-distributed type I transmembrane glycoprotein that binds hyaluronic acid (HA) in most cell types, including primary tumor cells and cancer-initiating cells and has roles in cell migration, cell–cell, and cell–matrix adhesion. HA-Derived conjugates and nanoparticles that target the CD44 receptor on cells have been reported for targeted delivery of therapeutics and imaging agents. Altering crucial interactions of HA with CD44 active sites holds significant importance in modulating targeting ability of hyaluronic acid to other cancer types that do not express the CD44 receptor or minimizing the interaction with CD44+ cells that are not target cells. The approach adopted here was deacetylation of the N-acetyl group and selective sulfation on the C6-OH on the HA polymer, which form critical interactions with the CD44 active site. Major interactions identified by molecular modeling were confirmed to be hydrogen bonding of the C6-OH with Tyr109 and hydrophobic interaction of the N-acetyl group with Tyr46, 83 and Ile92. Modified HA was synthesized and characterized and its interactions were assessed by in vitro and molecular modeling approaches. In vitro techniques included flow cytometry and fluorescence polarization, while in silico approaches included docking and binding calculations by a MM-PBSA approach. These studies indicated that while both deacetylation and sulfation of HA individually decrease CD44 interaction, both chemical modifications are required to minimize interaction with CD44+ cells. The results of this study represent the first step to effective retargeting of HA-derived NPs for imaging and drug delivery.

14 June 2017 in Chemical Communications
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Journal Article
Closed access
PDF file
CRCaroline M. Robb
Caroline M. Robb
JCJacob I. Contreras
Jacob I. Contreras
SKSmit Kour
Smit Kour
MTMargaret A. Taylor
Margaret A. Taylor
MAMOHAMMAD ABID
MOHAMMAD ABID
SRsandeep rana
sandeep rana
In this manuscript, for the first time, we report the synthesis of a PROTAC that selectively degrades cyclin dependent kinase 9 (CDK9).

4 September 2004 in Journal of Medicinal Chemistry
Verified
Journal Article
Closed access
ANAmarnath Natarajan
Amarnath Natarajan
YGYuhong Guo
Yuhong Guo
FHFrederick Harbinski
Frederick Harbinski
YFYun-Hua Fan
Yun-Hua Fan
HCHan Chen
Han Chen
JHJose A. Halperin
Jose A. Halperin

3 June 2016 in Journal of Medicinal Chemistry
Verified
Journal Article
Open access
YSYogesh A. Sonawane
Yogesh A. Sonawane
MTMargaret A. Taylor
Margaret A. Taylor
JNJohn Victor Napoleon
John Victor Napoleon
SRSandeep Rana
Sandeep Rana
JCJacob I. Contreras
Jacob I. Contreras
ANAmarnath Natarajan
Amarnath Natarajan
Cyclin dependent kinase (CDK) inhibitors have been the topic of intense research for nearly 2 decades due to their widely varied and critical functions within the cell. Recently CDK9 has emerged as a druggable target for the development of cancer therapeutics. CDK9 plays a crucial role in transcription regulation; specifically, CDK9 mediated transcriptional regulation of short-lived antiapoptotic proteins is critical for the survival of transformed cells. Focused chemical libraries based on a plethora of scaffolds have resulted in mixed success with regard to the development of selective CDK9 inhibitors. Here we review the regulation of CDK9, its cellular functions, and common core structures used to target CDK9, along with their selectivity profile and efficacy in vitro and in vivo.

1 June 2019 in Bioorganic & Medicinal Chemistry Letters
Verified
Journal Article
Closed access
SRSandeep Rana
Sandeep Rana
MBMourad Bendjennat
Mourad Bendjennat
SKSmit Kour
Smit Kour
HKHannah M. King
Hannah M. King
SKSmitha Kizhake
Smitha Kizhake
ANAmarnath Natarajan
Amarnath Natarajan