FILIP ROUDNICKY

Dr. FILIP ROUDNICKY


Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 August 2017 in Nature Biotechnology
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Journal Article
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TCThe FANTOM Consortium
The FANTOM Consortium
DRDerek de Rie
Derek de Rie
IAImad Abugessaisa
Imad Abugessaisa
Tanvir AlamTanvir Alam
Tanvir Alam
EAErik Arner
Erik Arner
MHMichiel J L de Hoon
Michiel J L de Hoon

1 July 2020 in Cancer Cell
Verified
Journal Article
Closed access
BHBenjamin Haley
Benjamin Haley
FRFILIP ROUDNICKY
FILIP ROUDNICKY

5 August 2020 in Proceedings of the National Academy of Sciences
Verified
Journal Article
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FRFILIP ROUDNICKY
FILIP ROUDNICKY
JZJitao David Zhang
Jitao David Zhang
BKBo Kyoung Kim
Bo Kyoung Kim
NPNikhil J. Pandya
Nikhil J. Pandya
YLYanjun Lan
Yanjun Lan
CCChad A. Cowan
Chad A. Cowan
Significance: Blood vessels in the central nervous system possess unique barrier properties that prevent infiltration of foreign substances and allow for precise delivery of ions, molecules, and immune cells into neural networks. Barrier breakdown is associated with a host of retinal and neurological disorders but few BRB/BBB-enhancing therapies have been developed. To identify novel barrier-inducing factors, we genetically engineered a transcriptional reporter cell line with CRISPR technology for compound library screening. Using this approach, we identified compounds, including a TGF-β receptor inhibitor, RepSox, which functions in vitro to increase barrier resistance in human primary and stem cell-derived endothelial cell lines. These data may inform future therapies for BRB/BBB disorders and retinal/neurological diseases.

3 May 2017 in The Journal of Pathology
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Journal Article
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FRFILIP ROUDNICKY
FILIP ROUDNICKY
LDLothar Dieterich
Lothar Dieterich
CPCedric Poyet
Cedric Poyet
LBLorenz Buser
Lorenz Buser
PWPeter Wild
Peter Wild
MDMichael Detmar
Michael Detmar

22 February 2018 in Oncogene
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Journal Article
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FRFILIP ROUDNICKY
FILIP ROUDNICKY
SYSun Young Yoon
Sun Young Yoon
SPSusanna Poghosyan
Susanna Poghosyan
SSSimon Schwager
Simon Schwager
CPCedric Poyet
Cedric Poyet
MDMichael Detmar
Michael Detmar
Thrombospondin-2 (TSP2) is an anti-angiogenic matricellular protein that inhibits tumor growth and angiogenesis. Tumor-associated blood vascular endothelial cells (BECs) were isolated from human invasive bladder cancers and from matched normal bladder tissue by immuno-laser capture microdissection. Exon expression profiling analyses revealed a particularly high expression of a short TSP2 transcript containing only the last 9 (3′) exons of the full-length TSP2 transcript. Using 5′ and 3′ RACE (rapid amplification of cDNA ends) and Sanger sequencing, we confirmed the existence of the shorter transcript of TSP2 (sTSP2) and determined its sequence which completely lacked the anti-angiogenic thrombospondin type 1 repeats domain. The largest open reading frame predicted within the transcript comprises 209 amino acids and matches almost completely the C-terminal lectin domain of full-length TSP2. We produced recombinant sTSP2 and found that unlike the full-length TSP2, sTSP2 did not inhibit vascular endothelial growth factor-A-induced proliferation of cultured human BECs, but in contrast when combined with TSP2 blocked the inhibitory effects of TSP2 on BEC proliferation. In vivo studies with stably transfected A431 squamous cell carcinoma cells revealed that full-length TSP2, but not sTSP2, inhibited tumor growth and angiogenesis. This study reveals that the transcriptional program of tumor stromal cells can change to transcribe a new version of an endogenous angiogenesis inhibitor that has lost its anti-angiogenic activity.

20 February 2025 in Stem Cell Reports
Verified
Journal Article
Open access
SMSonja Meier
Sonja Meier
ALAnne Sofie Gry Larsen
Anne Sofie Gry Larsen
FWFlorian Wanke
Florian Wanke
NMNicolas Mercado
Nicolas Mercado
AMArianna Mei
Arianna Mei
RJRavi Jagasia
Ravi Jagasia
Here, we developed a CRISPR-Cas9 arrayed screen to investigate lipid handling pathways in human induced pluripotent stem cell (iPSC)-derived microglia. We established a robust method for the nucleofection of CRISPR-Cas9 ribonucleoprotein complexes into iPSC-derived myeloid cells, enabling genetic perturbations. Using this approach, we performed a targeted screen to identify key regulators of lipid droplet formation dependent on Apolipoprotein E (APOE). We identify the Mammalian Target of Rapamycin Complex 1 (mTORC1) signaling pathway as a critical modulator of lipid storage in both APOE3 and APOE knockout microglia. This study is a proof of concept underscoring the utility of CRISPR-Cas9 technology in elucidating the molecular pathways of lipid dysregulation associated with Alzheimer's disease and neuroinflammation.