Barbara Seroka

Dr. Barbara Seroka

orcid

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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4 February 2020 in Molecules
Verified
Journal Article
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BSBarbara Seroka
Barbara Seroka
ZŁZenon Łotowski
Zenon Łotowski
AHAgnieszka Hryniewicka
Agnieszka Hryniewicka
LRLucie Rárová
Lucie Rárová
Rafal SicinskiRafal Sicinski
Rafal Sicinski
Jacek W. MorzyckiJacek W. Morzycki
Jacek W. Morzycki
A series of bile acid derived 1,2- and 1,3-diamines as well as their platinum(II) complexes were designed and synthesized in hope to get a highly cytotoxic compound by the combination of two bioactive moieties. All complexes obtained were subjected to cytotoxicity assays in vitro and some hybrid molecules showed an expected activity.

1 September 2018 in Tetrahedron
Verified
Journal Article
Closed access
AHAgnieszka Hryniewicka
Agnieszka Hryniewicka
ZŁZenon Łotowski
Zenon Łotowski
BSBarbara Seroka
Barbara Seroka
SWStanisław Witkowski
Stanisław Witkowski
Jacek W. MorzyckiJacek W. Morzycki
Jacek W. Morzycki

22 December 2021 in Journal of Biological Chemistry
Verified
Journal Article
Open access
MZMichael Zahn
Michael Zahn
GKGerhard Koenig
Gerhard Koenig
HPHuy Viet Cuong Pham
Huy Viet Cuong Pham
BSBarbara Seroka
Barbara Seroka
RLRyszard Lazny
Ryszard Lazny
TRThore Rohwerder
Thore Rohwerder
Actinobacterial 2-hydroxyacyl-CoA lyase reversibly catalyzes the thiamine diphosphate-dependent cleavage of 2-hydroxyisobutyryl-CoA to formyl-CoA and acetone. This enzyme has great potential for use in synthetic one-carbon assimilation pathways for sustainable production of chemicals, but lacks details of substrate binding and reaction mechanism for biochemical reengineering. We determined crystal structures of the tetrameric enzyme in the closed conformation with bound substrate, covalent postcleavage intermediate, and products, shedding light on active site architecture and substrate interactions. Together with molecular dynamics simulations of the covalent precleavage complex, the complete catalytic cycle is structurally portrayed, revealing a proton transfer from the substrate acyl Cβ hydroxyl to residue E493 that returns it subsequently to the postcleavage Cα-carbanion intermediate. Kinetic parameters obtained for mutants E493A, E493Q, and E493K confirm the catalytic role of E493 in the WT enzyme. However, the 10- and 50-fold reduction in lyase activity in the E493A and E493Q mutants, respectively, compared with WT suggests that water molecules may contribute to proton transfer. The putative catalytic glutamate is located on a short α-helix close to the active site. This structural feature appears to be conserved in related lyases, such as human 2-hydroxyacyl-CoA lyase 2. Interestingly, a unique feature of the actinobacterial 2-hydroxyacyl-CoA lyase is a large C-terminal lid domain that, together with active site residues L127 and I492, restricts substrate size to ≤C5 2-hydroxyacyl residues. These details about the catalytic mechanism and determinants of substrate specificity pave the ground for designing tailored catalysts for acyloin condensations for one-carbon and short-chain substrates in biotechnological applications.

1 July 2019 in Steroids
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Journal Article
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BSBarbara Seroka
Barbara Seroka
ZŁZenon Łotowski
Zenon Łotowski
AWAgnieszka Wojtkielewicz
Agnieszka Wojtkielewicz
PBPrzemysław Bazydło
Przemysław Bazydło
EDEwelina Dudź
Ewelina Dudź
Jacek W. MorzyckiJacek W. Morzycki
Jacek W. Morzycki

26 May 2015 in The Journal of Organic Chemistry
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Journal Article
Closed access
IJIzabella Jastrzebska
Izabella Jastrzebska
MMMaja Morawiak
Maja Morawiak
JRJoanna Rode
Joanna Rode
BSBarbara Seroka
Barbara Seroka
LSLeszek Siergiejczyk
Leszek Siergiejczyk
Jacek W. MorzyckiJacek W. Morzycki
Jacek W. Morzycki

17 December 2017 in Journal of Sulfur Chemistry
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Journal Article
Closed access
ATAneta Maria Tomkiel
Aneta Maria Tomkiel
UKUrszula Kiełczewska
Urszula Kiełczewska
BSBarbara Seroka
Barbara Seroka
ZŁZenon Łotowski
Zenon Łotowski
New dimeric cholaphanes with disulfide spacers were prepared as potential supramolecular hosts. The spacers bind two identical steroidal subunits through C3, C3′ and C24, C24′ positions (head-to-head isomer – ‘cis-dimer’; 5) or C3, C24′ and C3′, C24 positions (head-to-tail isomer – ‘trans-dimer’; 4). Another cyclic dimer containing both disulfide and sulfide spacers in its structure (6) was also obtained.