Explaining the large-scale diversity of soil organisms that drive biogeochemical processes—and their responses to environmental change—is critical. However, identifying consistent drivers of belowground diversity and abundance for some soil organisms at large spatial scales remains problematic. Here we investigate a major guild, the ectomycorrhizal fungi, across European forests at a spatial scale and resolution that is—to our knowledge—unprecedented, to explore key biotic and abiotic predictors of ectomycorrhizal diversity and to identify dominant responses and thresholds for change across complex environmental gradients. We show the effect of 38 host, environment, climate and geographical variables on ectomycorrhizal diversity, and define thresholds of community change for key variables. We quantify host specificity and reveal plasticity in functional traits involved in soil foraging across gradients. We conclude that environmental and host factors explain most of the variation in ectomycorrhizal diversity, that the environmental thresholds used as major ecosystem assessment tools need adjustment and that the importance of belowground specificity and plasticity has previously been underappreciated.

Forest soils harbor hyper-diverse microbial communities which fundamentally regulate carbon and nutrient cycling across the globe. Directly testing hypotheses on how microbiome diversity is linked to forest carbon storage has been difficult, due to a lack of paired data on microbiome diversity and in situ observations of forest carbon accumulation and storage. Here, we investigated the relationship between soil microbiomes and forest carbon across 238 forest inventory plots spanning 15 European countries. We show that the composition and diversity of fungal, but not bacterial, species is tightly coupled to both forest biotic conditions and a seven-fold variation in tree growth rates and biomass carbon stocks when controlling for the effects of dominant tree type, climate, and other environmental factors. This linkage is particularly strong for symbiotic endophytic and ectomycorrhizal fungi known to directly facilitate tree growth. Since tree growth rates in this system are closely and positively correlated with belowground soil carbon stocks, we conclude that fungal composition is a strong predictor of overall forest carbon storage across the European continent.

Climate changes influencing forest ecosystems include increased air temperatures and CO₂ concentrations as well as droughts and decreased water availability. These changes in turn effect changes in species composition of both host plants and pathogens. In the case of Armillaria, climate changes cause an increase in the activity of individual species and modify the growth of rhizomorphs, increasing the susceptibility of trees. The relationship between climate changes and the biotic elements of Armillaria disease are discussed in overview.

As recently reported, European mistletoe has become an important agent of damage to forest trees in Central Europe. To document the extent of its impact, host and environmental preferences, as well as spatial and temporal dynamics, we have analyzed the results of 10 years of annual assessments of tree damage in level 1 plots of country-wide national forest monitoring. Mistletoe was found on 12 forest tree species, most frequently on silver fir and Scots pine, much less often on birches and deciduous admixture species. Common beech, pedunculate, and sessile oaks, as well as coniferous admixture species, were found to be free from the parasite. Mistletoe was more common on larger trees, mainly those in the 1st and 2nd Kraft classes, characterized by a higher DBH value than trees without V. album. Infestation was also age-dependent with low numbers of infested trees in young age classes and a much higher proportion of infested trees being over 80–100 years in age. Defoliation of trees colonized by mistletoe was found to be significantly higher than in trees free from the parasite, confirming the adverse effect of infestation on tree health. The increase of relative incidence of tree infestation by mistletoe in forests in Poland was high throughout the entire period 2008–2018 and significant for the most threatened host species: silver fir, Scots pine, and birches. It was also found that spread direction was from west to east and that the occurrence of V. album shows clear regionalization. The most endangered forests were located within a 200 km wide zone ranging through lowland Central Poland from the border with Germany down to the border with Ukraine and Belarus. The highest concentration occurred in the Western part of the country. Outside this zone (to the north and south) the mistletoe was much less abundant as expressed by the amount of injuries caused by the parasite or infested trees per plot.