Gernot Zarfel

Dr. Gernot Zarfel

Medical University of Graz
orcid

Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2015 in Antimicrobial Agents and Chemotherapy
Verified
Journal Article
Open access
PDF file
ELEva Leitner
Eva Leitner
GZGernot Zarfel
Gernot Zarfel
JLJosefa Luxner
Josefa Luxner
KHKathrin Herzog
Kathrin Herzog
SPShiva Pekard-Amenitsch
Shiva Pekard-Amenitsch
ZSZollner Schwetz
Zollner Schwetz
We investigated sinks as possible sources of a prolonged Klebsiella pneumonia carbapenemase (KPC)-producing Klebsiella oxytoca outbreak. Seven carbapenem-resistant K. oxytoca isolates were identified in sink drains in 4 patient rooms and in the medication room. Investigations for resistance genes and genetic relatedness of patient and environmental isolates revealed that all the isolates harbored the bla KPC-2 and bla TEM-1 genes and were genetically indistinguishable. We describe here a clonal outbreak caused by KPC-2-producing K. oxytoca , and handwashing sinks were a possible reservoir.

1 February 2013 in Atmospheric Environment
Verified
Journal Article
Closed access
DHD. Haas
D. Haas
HGH. Galler
H. Galler
JLJ. Luxner
J. Luxner
GZGernot Zarfel
Gernot Zarfel
WBW. Buzina
W. Buzina
FRF.F. Reinthaler
F.F. Reinthaler

1 November 2005 in Microbiology
Verified
Journal Article
Closed access
DZDoris Zahrl
Doris Zahrl
MWMaria Wagner
Maria Wagner
KBKarin Bischof
Karin Bischof
MBMichaela Bayer
Michaela Bayer
BZBarbara Zavecz
Barbara Zavecz
GKGünther Koraimann
Günther Koraimann
Specialized lytic transglycosylases are muramidases capable of locally degrading the peptidoglycan meshwork of Gram-negative bacteria. Specialized lytic transglycosylase genes are present in clusters encoding diverse macromolecular transport systems. This paper reports the analysis of selected members of the specialized lytic transglycosylase family from type III and type IV secretion systems. These proteins were analysedin vivoby assaying their ability to complement the DNA transfer defect of the conjugative F-like plasmid R1-16 lacking a functional P19 protein, the specialized lytic transglycosylase of this type IV secretion system. Heterologous complementation was accomplished using IpgF from the plasmid-encoded type III secretion system ofShigella sonneiand TrbN from the type IV secretion system of the conjugative plasmid RP4. In contrast, neither VirB1 proteins (Agrobacterium tumefaciens,Brucella suis) nor IagB (Salmonella enterica) could functionally replace P19.In vitro, IpgF, IagB, both VirB1 proteins, HP0523 (Helicobacter pylori) and P19 displayed peptidoglycanase activity in zymogram analyses. Using an established test system and a newly developed assay it was shown that IpgF degraded peptidoglycan in solution. IpgF was active only after removal of the chaperonin GroEL, which co-purified with IpgF and inhibited its enzymic activity. A mutant IpgF protein in which the predicted catalytic amino acid, Glu42, was replaced by Gln, was completely inactive. IpgF-catalysed peptidoglycan degradation was optimal at pH 6 and was inhibited by the lytic transglycosylase inhibitors hexa-N-acetylchitohexaose and bulgecin A.

1 March 2010 in Water Research
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Journal Article
Closed access
FRFranz Ferdinand Reinthaler
Franz Ferdinand Reinthaler
GFGebhard Feierl
Gebhard Feierl
HGHerbert Galler
Herbert Galler
DHDoris Haas
Doris Haas
ELEva Leitner
Eva Leitner
GZGernot Zarfel
Gernot Zarfel

3 May 2016 in Frontiers in Microbiology
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Journal Article
Open access
CKClemens Kittinger
Clemens Kittinger
MLMichaela Lipp
Michaela Lipp
RBRita Baumert
Rita Baumert
BFBettina Folli
Bettina Folli
GKGünther Koraimann
Günther Koraimann
GZGernot Zarfel
Gernot Zarfel
Spread and persistence of antibiotic resistance pose a severe threat to human health, yet there is still lack of knowledge about reservoirs of antibiotic resistant bacteria in the environment. We took the opportunity of the Joint Danube Survey 3 (JDS3), the world's biggest river research expedition of its kind in 2013, to analyse samples originating from different sampling points along the whole length of the river. Due to its high clinical relevance, we concentrated on the characterization of Pseudomonas spp. and evaluated the resistance profiles of Pseudomonas spp. which were isolated from eight sampling points. In total, 520 Pseudomonas isolates were found, 344 (66.0%) isolates were identified as Pseudomonas putida, and 141 (27.1%) as Pseudomonas fluorescens, all other Pseudomonas species were represented by less than five isolates, among those two P. aeruginosa isolates. Thirty seven percent (37%) of all isolated Pseudomonas species showed resistance to at least one out of eleven tested antibiotics. The most common resistance was against meropenem (30.4% / 158 isolates) piperacillin/tazobactam (10.6% / 55 isolates) and ceftazidime (4.2% / 22 isolates). 16 isolates (3.1% / 16 isolates) were multi-resistant. For each tested antibiotic at least one resistant isolate could be detected. Sampling points from the upper stretch of the River Danube showed more resistant isolates than downriver. Our results suggest that antibiotic resistance can be acquired by and persists even in Pseudomonas species that are normally not in direct contact with humans. A possible scenario is that these bacteria provide a reservoir of antibiotic resistance genes that can spread to related human pathogens by horizontal gene transfer.

3 November 2016 in PLOS ONE
Verified
Journal Article
Open access
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CKClemens Kittinger
Clemens Kittinger
MLMichaela Lipp
Michaela Lipp
BFBettina Folli
Bettina Folli
AKAlexander Kirschner
Alexander Kirschner
RBRita Baumert
Rita Baumert
GZGernot Zarfel
Gernot Zarfel
In a clinical setting it seems to be normal these days that a relevant proportion or even the majority of different bacterial species has already one or more acquired antibiotic resistances. Unfortunately, the overuse of antibiotics for livestock breeding and medicine has also altered the wild-type resistance profiles of many bacterial species in different environmental settings. As a matter of fact, getting in contact with resistant bacteria is no longer restricted to hospitals. Beside food and food production, the aquatic environment might also play an important role as reservoir and carrier. The aim of this study was the assessment of the resistance patterns of Escherichia coli and Klebsiella spp. out of surface water without prior enrichment and under non-selective culture conditions (for antibiotic resistance). In addition, the presence of clinically important extended spectrum beta lactamase (ESBL) and carbapenmase harboring Enterobacteriaceae should be investigated. During Joint Danube Survey 3 (2013), water samples were taken over the total course of the River Danube. Resistance testing was performed for 21 different antibiotics. Samples were additionally screened for ESBL or carbapenmase harboring Enterobacteriaceae. 39% of all isolated Escherichia coli and 15% of all Klebsiella spp. from the river Danube had at least one acquired resistance. Resistance was found against all tested antibiotics except tigecycline. Taking a look on the whole stretch of the River Danube the proportion of multiresistances did not differ significantly. In total, 35 ESBL harboring Enterobacteriaceae, 17 Escherichia coli, 13 Klebsiella pneumoniae and five Enterobacter spp. were isolated. One Klebsiella pneumoniae harboring NMD-1 carbapenmases and two Enterobacteriaceae with KPC-2 could be identified. Human generated antibiotic resistance is very common in E. coli and Klebsiella spp. in the River Danube. Even isolates with resistance patterns normally associated with intensive care units are present.