Philip Farrell

Prof. Philip Farrell

orcid

Research Focus & Metrics

Academic Career Length

28Years (1999-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 September 2008 in Journal of Cystic Fibrosis
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PFPhilip Farrell
Philip Farrell

Verified
Journal Article
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VSVirginie Scotet
Virginie Scotet
HGHector Gutierrez
Hector Gutierrez
PFPhilip Farrell
Philip Farrell
Newborn screening (NBS) for cystic fibrosis (CF) has been performed in many countries for as long as four decades and has transformed the routine method for diagnosing this genetic disease and improved the quality and quantity of life for people with this potentially fatal disorder. Each region has typically undertaken CF NBS after analysis of the advantages, costs, and challenges, particularly regarding the relationship of benefits to risks. The very fact that all regions that began screening for CF have continued their programs implies that public health and clinical leaders consider early diagnosis through screening to be worthwhile. Currently, many regions where CF NBS has not yet been introduced are considering options and in some situations negotiating with healthcare authorities as policy and economic factors are being debated. To consider the assigned question (where is it worthwhile?), we have completed a worldwide analysis of data and factors that should be considered when CF NBS is being contemplated. This article describes the lessons learned from the journey toward universal screening wherever CF is prevalent and an analytical framework for application in those undecided regions. In fact, the lessons learned provide insights about what is necessary to make CF NBS worthwhile.

8 August 2018 in European Journal of Human Genetics
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PFPhilip Farrell
Philip Farrell
CFClaude Férec
Claude Férec
MMMilan Macek
Milan Macek
TFThomas Frischer
Thomas Frischer
SRSabine Renner
Sabine Renner
Emmanuelle GENINEmmanuelle GENIN
Emmanuelle GENIN
The high incidence of cystic fibrosis (CF) is due to the frequency of the c.1521_1523delCTT variant in the cystic fibrosis transmembrane conductance regulator (CFTR), but its age and origin are uncertain. This gap limits attempts to shed light on the presumed heterozygote selective advantage that accounts for the variant’s high prevalence among Caucasian Europeans and Europe-derived populations. In addition, explaining the nature of heterozygosity to screened individuals with one c.1521_1523delCTT variant is challenging when families raise questions about these issues. To address this gap, we obtained DNA samples from 190 patients bearing c.1521_1523delCTT and their parents residing in geographically distinct European populations plus a Germany-derived population in the USA. We identified microsatellites spanning CFTR and reconstructed haplotypes at 10 loci to estimate the time/age of the most recent common ancestor (tMRCA) with the Estiage program. We found that the age estimates differ between northwestern populations, where the mean tMRCA values vary between 4600 and 4725 years, and the southeastern populations where c.1521_1523delCTT seems to have been introduced only about 1000 years ago. The tMRCA values of Central Europeans were intermediate. Thus, our data resolve a controversy by establishing an early Bronze Age origin of the c.1521_1523delCTT allele and demonstrating its likely spread from northwest to southeast during ancient migrations. Moreover, taking the archeological record into account, our results introduce a novel concept by suggesting that Bell Beaker folk were the probable migrating population responsible for the early dissemination of c.1521_1523delCTT in prehistoric Europe.

25 October 2022 in Pediatric Pulmonology
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Journal Article
Open access
MMMeghan E. McGarry
Meghan E. McGarry
CRClement Ren
Clement Ren
RWRunyu Wu
Runyu Wu
PFPhilip Farrell
Philip Farrell
SMSusanna A McColley
Susanna A McColley
Background: Newborn screening (NBS) algorithms for cystic fibrosis (CF) vary in the United State of America and include different cystic fibrosis transmembrane conductance regulator (CFTR) variants. CFTR variant distribution varies among racial and ethnic groups.Objective: Our objectives were to identify differences in detection rate by race and ethnicity for CFTR variant panels, identify each US state detection rate for CFTR variant panels, and describe the rate of false‐negative NBS and delayed diagnoses by race and ethnicity.Methods: This is a cross‐sectional analysis of the detection rate of at least 1 CFTR variant for seven panels by race and ethnicity in genotyped people with CF (PwCF) or CFTR‐related metabolic syndrome (CRMS)/CFTR‐related disorders in CF Foundation Patient Registry (CFFPR) in 2020. We estimated the case detection rate of CFTR variant panels by applying the detection rate to Census data. Using data from CFFPR, we compared the rate of delayed diagnosis or false‐negative NBS by race and ethnicity.Results: For all panels, detection of at least 1 CFTR variant was highest in non‐Hispanic White PwCF (87.5%−97.0%), and lowest in Black, Asian, and Hispanic PwCF (41.9%−93.1%). Detection of at least 1 CFTR variant was lowest in Black and Asian people with CRMS/CFTR‐related disorders (48.4%−64.8%). States with increased racial and ethnic diversity have lower detection rates for all panels. Overall, 3.8% PwCF had a false‐negative NBS and 11.8% had a delayed diagnosis; Black, Hispanic, and mixed‐race PwCF were overrepresented.Conclusion: CFTR variant panels have lower detection rates in minoritized racial and ethnic groups leading to false‐negative NBS, delayed diagnosis, and likely health disparities.

1 December 2013 in Journal of Cystic Fibrosis
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Journal Article
Closed access
SSSuzanne M. Shoff
Suzanne M. Shoff
ATAudrey Tluczek
Audrey Tluczek
ALAnita Laxova
Anita Laxova
PFPhilip Farrell
Philip Farrell
HLHuiChuan J. Lai
HuiChuan J. Lai

Verified
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MMMeghan Elizabeth McGarry
Meghan Elizabeth McGarry
KRKaren Siklosi Raraigh
Karen Siklosi Raraigh
PFPhilip Farrell
Philip Farrell
FSFaith Shropshire
Faith Shropshire
KPKarey Ann Padding
Karey Ann Padding
SMSusanna A McColley
Susanna A McColley
Newborn screening for cystic fibrosis (CF) has been universal in the US since 2010; however, there is significant variation among newborn screening algorithms. Systematic reviews were used to develop seven recommendations for newborn screening program practices to improve timeliness, sensitivity, and equity in diagnosing infants with CF: (1) The CF Foundation recommends the use of a floating immunoreactive trypsinogen (IRT) cutoff over a fixed IRT cutoff; (2) The CF Foundation recommends using a very high IRT referral strategy in CF newborn screening programs whose variant panel does not include all CF-causing variants in CFTR2 or does not have a variant panel that achieves at least 95% sensitivity in all ancestral groups within the state; (3) The CF Foundation recommends that CF newborn screening algorithms should not limit CFTR variant detection to the F508del variant or variants included in the American College of Medical Genetics-23 panel; (4) The CF Foundation recommends that CF newborn screening programs screen for all CF-causing CFTR variants in CFTR2; (5) The CF Foundation recommends conducting CFTR variant screening twice weekly or more frequently as resources allow; (6) The CF Foundation recommends the inclusion of a CFTR sequencing tier following IRT and CFTR variant panel testing to improve the specificity and positive predictive value of CF newborn screening; (7) The CF Foundation recommends that both the primary care provider and the CF specialist be notified of abnormal newborn screening results. Through implementation, it is anticipated that these recommendations will result in improved sensitivity, equity, and timeliness of CF newborn screening, leading to improved health outcomes for all individuals diagnosed with CF following newborn screening and a decreased burden on families.