Tomohiro Nishimura

Dr. Tomohiro Nishimura

orcid

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
12 April 2024 in Science
Verified
Journal Article
Closed access
TCTyler H. Coale
Tyler H. Coale
VLValentina Loconte
Valentina Loconte
KTKendra A. Turk-Kubo
Kendra A. Turk-Kubo
BVBieke Vanslembrouck
Bieke Vanslembrouck
WMWing Kwan Esther Mak
Wing Kwan Esther Mak
JZJonathan P. Zehr
Jonathan P. Zehr
Symbiotic interactions were key to the evolution of chloroplast and mitochondria organelles, which mediate carbon and energy metabolism in eukaryotes. Biological nitrogen fixation, the reduction of abundant atmospheric nitrogen gas (N2) to biologically available ammonia, is a key metabolic process performed exclusively by prokaryotes.CandidatusAtelocyanobacterium thalassa, or UCYN-A, is a metabolically streamlined N2-fixing cyanobacterium previously reported to be an endosymbiont of a marine unicellular alga. Here we show that UCYN-A has been tightly integrated into algal cell architecture and organellar division and that it imports proteins encoded by the algal genome. These are characteristics of organelles and show that UCYN-A has evolved beyond endosymbiosis and functions as an early evolutionary stage N2-fixing organelle, or “nitroplast.”

20 August 2015 in Marine Drugs
Verified
Journal Article
Open access
PDF file
TKTakashi Kadono
Takashi Kadono
NKNozomu Kira
Nozomu Kira
KSKengo Suzuki
Kengo Suzuki
OIOsamu Iwata
Osamu Iwata
TOTakeshi Ohama
Takeshi Ohama
MAMasao Adachi
Masao Adachi
Carotenoids exert beneficial effects on human health through their excellent antioxidant activity. To increase carotenoid productivity in the marine Pennales Phaeodactylum tricornutum, we genetically engineered the phytoene synthase gene (psy) to improve expression because RNA-sequencing analysis has suggested that the expression level of psy is lower than other enzyme-encoding genes that are involved in the carotenoid biosynthetic pathway. We isolated psy from P. tricornutum, and this gene was fused with the enhanced green fluorescent protein gene to detect psy expression. After transformation using the microparticle bombardment technique, we obtained several P. tricornutum transformants and confirmed psy expression in their plastids. We investigated the amounts of PSY mRNA and carotenoids, such as fucoxanthin and β-carotene, at different growth phases. The introduction of psy increased the fucoxanthin content of a transformants by approximately 1.45-fold relative to the levels in the wild-type diatom. However, some transformants failed to show a significant increase in the carotenoid content relative to that of the wild-type diatom. We also found that the amount of PSY mRNA at log phase might contribute to the increase in carotenoids in the transformants at stationary phase.



15 January 2020 in Toxins
Verified
Journal Article
Open access
PDF file
LRLesley Rhodes
Lesley Rhodes
KSKirsty Smith
Kirsty Smith
SMSam Murray
Sam Murray
TNTomohiro Nishimura
Tomohiro Nishimura
SFSarah C Finch
Sarah C Finch
Gambierdiscus and Fukuyoa species have been identified in Aotearoa/New Zealand’s coastal waters and G. polynesiensis, a known producer of ciguatoxins, has been isolated from Rangitāhua/Kermadec Islands (a New Zealand territory). The warming of the Tasman Sea and the waters around New Zealand’s northern subtropical coastline heighten the risk of Gambierdiscus proliferating in New Zealand. If this occurs, the risk of ciguatera fish poisoning due to consumption of locally caught fish will increase. Research, including the development and testing of sampling methods, molecular assays, and chemical and toxicity tests, will continue. Reliable monitoring strategies are important to manage and mitigate the risk posed by this emerging threat. The research approaches that have been made, many of which will continue, are summarised in this review.

24 July 2024 in Environmental Microbiology Reports
Verified
Journal Article
Open access
EMEsther Wing Kwan Mak
Esther Wing Kwan Mak
KTKendra A. Turk‐Kubo
Kendra A. Turk‐Kubo
DCDavid A. Caron
David A. Caron
RHRachel C. Harbeitner
Rachel C. Harbeitner
JMJonathan D. Magasin
Jonathan D. Magasin
JZJonathan P. Zehr
Jonathan P. Zehr
Biological nitrogen fixation provides fixed nitrogen for microbes living in the oligotrophic open ocean. UCYN ‐ A2 , the previously known symbiont of Braarudosphaera bigelowii , now believed to be an early‐stage B. bigelowii organelle that exchanges fixed nitrogen for fixed carbon, is globally distributed. Indirect evidence suggested that B. bigelowii might be a mixotrophic (phagotrophic) phototrophic flagellate. The goal of this study was to determine if B. bigelowii can graze on bacteria using several independent approaches. The results showed that B. bigelowii grazed on co‐occurring bacteria at a rate of 5–7 cells/h/ B. bigelowii and that the overall grazing rate was significantly higher at nighttime than at daytime. Bacterial abundance changes, assessed with 16S rRNA gene amplicon sequencing analysis, may have indicated preferential grazing by B. bigelowii on specific bacterial genotypes. In addition, Lysotracker™ staining of B. bigelowii suggested digestive activity inside B. bigelowii . Carbon and nitrogen fixation measurements revealed that the carbon demand of B. bigelowii could not be fulfilled by photosynthesis alone, implying supplementation by heterotrophy. These independent lines of evidence together revealed that B. bigelowii engages in phagotrophy, which, beyond serving as a supplementary source of carbon and energy, may also facilitate the indirect assimilation of inorganic nutrients.