Shigeru Yanagi

Prof. Shigeru Yanagi

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Research Focus & Metrics

Academic Career Length

33Years (1994-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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27 July 2006 in The EMBO Journal
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Journal Article
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RYRyo Yonashiro
Ryo Yonashiro
SISatoshi Ishido
Satoshi Ishido
SKShinkou Kyo
Shinkou Kyo
TFToshifumi Fukuda
Toshifumi Fukuda
EGEiji Goto
Eiji Goto
SYShigeru Yanagi
Shigeru Yanagi
In this study, we have identified a novel mitochondrial ubiquitin ligase, designated MITOL, which is localized in the mitochondrial outer membrane. MITOL possesses a Plant Homeo‐Domain (PHD) motif responsible for E3 ubiquitin ligase activity and predicted four‐transmembrane domains. MITOL displayed a rapid degradation by autoubiquitination activity in a PHD‐dependent manner. HeLa cells stably expressing a MITOL mutant lacking ubiquitin ligase activity or MITOL‐deficient cells by small interfering RNA showed an aberrant mitochondrial morphology such as fragmentation, suggesting the enhancement of mitochondrial fission by MITOL dysfunction. Indeed, a dominant‐negative expression of Drp1 mutant blocked mitochondrial fragmentation induced by MITOL depletion. We found that MITOL associated with and ubiquitinated mitochondrial fission protein hFis1 and Drp1. Pulse–chase experiment showed that MITOL overexpression increased turnover of these fission proteins. In addition, overexpression phenotype of hFis1 could be reverted by MITOL co‐overexpression. Our finding indicates that MITOL plays a critical role in mitochondrial dynamics through the control of mitochondrial fission proteins.

1 November 2009 in Molecular Biology of the Cell
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Journal Article
Closed access
RYRyo Yonashiro
Ryo Yonashiro
ASAyumu Sugiura
Ayumu Sugiura
MMMisako Miyachi
Misako Miyachi
TFToshifumi Fukuda
Toshifumi Fukuda
NMNobuko Matsushita
Nobuko Matsushita
SYShigeru Yanagi
Shigeru Yanagi
We have previously identified a novel mitochondrial ubiquitin ligase, MITOL, which is localized in the mitochondrial outer membrane and is involved in the control of mitochondrial dynamics. In this study, we examined whether MITOL eliminates misfolded proteins localized to mitochondria. Mutant superoxide dismutase1 (mSOD1), one of misfolded proteins, has been shown to localize in mitochondria and induce mitochondrial dysfunction, possibly involving in the onset and progression of amyotrophic lateral sclerosis. We found that in the mitochondria, MITOL interacted with and ubiquitinated mSOD1 but not wild-type SOD1. In vitro ubiquitination assay revealed that MITOL directly ubiquitinates mSOD1. Cycloheximide-chase assay in the Neuro2a cells indicated that MITOL overexpression promoted mSOD1 degradation and suppressed both the mitochondrial accumulation of mSOD1 and mSOD1-induced reactive oxygen species (ROS) generation. Conversely, the overexpression of MITOL CS mutant and MITOL knockdown by specific siRNAs resulted in increased accumulation of mSOD1 in mitochondria, which enhanced mSOD1-induced ROS generation and cell death. Thus, our findings indicate that MITOL plays a protective role against mitochondrial dysfunction caused by the mitochondrial accumulation of mSOD1 via the ubiquitin–proteasome pathway.

13 June 2019 in The EMBO Journal
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Journal Article
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KTKeisuke Takeda
Keisuke Takeda
SNShun Nagashima
Shun Nagashima
ISIsshin Shiiba
Isshin Shiiba
AUAoi Uda
Aoi Uda
TTTakeshi Tokuyama
Takeshi Tokuyama
SYShigeru Yanagi
Shigeru Yanagi
EMBO Press is an editorially independent publishing platform for the development of EMBO scientific publications.

10 February 2025 in Nature Communications
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Journal Article
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ISIsshin Shiiba
Isshin Shiiba
NINaoki Ito
Naoki Ito
HOHijiri Oshio
Hijiri Oshio
YIYuto Ishikawa
Yuto Ishikawa
TNTakahiro Nagao
Takahiro Nagao
SYShigeru Yanagi
Shigeru Yanagi
The proximal domains of mitochondria and the endoplasmic reticulum (ER) are linked by tethering factors on each membrane, allowing the efficient transport of substances, including lipids and calcium, between them. However, little is known about the regulation and function of mitochondria-ER contacts (MERCs) dynamics under mitochondrial damage. In this study, we apply NanoBiT technology to develop the MERBiT system, which enables the measurement of reversible MERCs formation in living cells. Analysis using this system suggests that induction of mitochondrial ROS increases MERCs formation via RMDN3 (also known as PTPIP51)-VAPB tethering driven by RMDN3 phosphorylation. Disruption of this tethering caused lipid radical accumulation in mitochondria, leading to cell death. The lipid radical transfer activity of the TPR domain in RMDN3, as revealed by an in vitro liposome assay, suggests that RMDN3 transfers lipid radicals from mitochondria to the ER. Our findings suggest a potential role for MERCs in cell survival strategy by facilitating the removal of mitochondrial lipid radicals under mitochondrial damage.

26 September 2023 in Genes
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Journal Article
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TTTAKESHI TOKUYAMA
TAKESHI TOKUYAMA
SYShigeru Yanagi
Shigeru Yanagi
Mitochondrial dynamics, including fission and fusion processes, are essential for heart health. Mitochondria, the powerhouses of cells, maintain their integrity through continuous cycles of biogenesis, fission, fusion, and degradation. Mitochondria are relatively immobile in the adult heart, but their morphological changes due to mitochondrial morphology factors are critical for cellular functions such as energy production, organelle integrity, and stress response. Mitochondrial fusion proteins, particularly Mfn1/2 and Opa1, play multiple roles beyond their pro-fusion effects, such as endoplasmic reticulum tethering, mitophagy, cristae remodeling, and apoptosis regulation. On the other hand, the fission process, regulated by proteins such as Drp1, Fis1, Mff and MiD49/51, is essential to eliminate damaged mitochondria via mitophagy and to ensure proper cell division. In the cardiac system, dysregulation of mitochondrial dynamics has been shown to cause cardiac hypertrophy, heart failure, ischemia/reperfusion injury, and various cardiac diseases, including metabolic and inherited cardiomyopathies. In addition, mitochondrial dysfunction associated with oxidative stress has been implicated in atherosclerosis, hypertension and pulmonary hypertension. Therefore, understanding and regulating mitochondrial dynamics is a promising therapeutic tool in cardiac diseases. This review summarizes the role of mitochondrial morphology in heart diseases for each mitochondrial morphology regulatory gene, and their potential as therapeutic targets to heart diseases.

9 March 2014 in The Journal of Biochemistry
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Journal Article
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SNShun Nagashima
Shun Nagashima
TTTakeshi Tokuyama
Takeshi Tokuyama
RYRyo Yonashiro
Ryo Yonashiro
RIRyoko Inatome
Ryoko Inatome
SYShigeru Yanagi
Shigeru Yanagi
Accumulating evidence indicate physiological significance of mitochondrial dynamics such as mitochondrial fusion and division, the dynamic movement of mitochondria along microtubules and interaction of mitochondria with the endoplasmic reticulum. A disruption in mitochondrial dynamics leads to a functional deterioration of mitochondria, resulting in a variety of diseases including neurodegenerative disorders. We previously identified a mitochondrial ubiquitin ligase MITOL/MARCH5, which belongs to the membrane-associated RING-CH E3 ubiquitin ligase (MARCH) family (also called MARCH5). MITOL plays an important role in the regulation of mitochondrial dynamics including mitochondrial morphology, transport and interaction with ER, at least in part, through the ubiquitinations of mitochondrial fission factor Drp1, microtubule-associated protein 1B and mitofusin2, respectively. This review focuses on recent findings that show how MITOL regulates mitochondrial dynamics and which suggest physiological disorders resulting from a failure in such regulation.