dekun chen

dekun chen


Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 March 2018 in Infection, Genetics and Evolution
Verified
Journal Article
Closed access
SRSiddiq Ur Rahman
Siddiq Ur Rahman
XYXiaoting Yao
Xiaoting Yao
XLXiangchen Li
Xiangchen Li
DCdekun chen
dekun chen
STShiheng Tao
Shiheng Tao

31 July 2015 in PLOS ONE
Verified
Journal Article
Open access
PDF file
YZYanqing Zhao
Yanqing Zhao
MZMing Zhou
Ming Zhou
YGYang Gao
Yang Gao
HLHeyuan Liu
Heyuan Liu
WYWenyu Yang
Wenyu Yang
DCdekun chen
dekun chen
Mastitis, one of the most costly diseases in dairy ruminants, is an inflammation of the mammary gland caused by pathogenic infection. The mechanisms of adaptive immunity against pathogens in mastitis have not been fully elucidated. To investigate T helper cell-mediated adaptive immune responses, we established a mastitis model by challenge with an inoculum of 4 × 106 colony-forming units of Staphylococcus aureus in the mammary gland of lactating mice, followed by quantification of bacterial burden and histological analysis. The development of mastitis was accompanied by a significant increase in both Th17 and Th1 cells in the mammary gland. Moreover, the relative expression of genes encoding cytokines and transcription factors involved in the differentiation and function of these T helper cells, including Il17, Rorc, Tgfb, Il1b, Il23, Ifng, Tbx21, and Il12, was greatly elevated in the infected mammary gland. IL-17 is essential for neutrophil recruitment to infected mammary gland via CXC chemokines, whereas the excessive IL-17 production contributes to tissue damage in mastitis. In addition, a shift in T helper cell polarization toward Th2 and Treg cells was observed 5 days post-infection, and the mRNA expression of the anti-inflammatory cytokine Il10 was markedly increased at day 7 post-infection. These results indicate that immune clearance of Staphylococcus aureus in mastitis is facilitated by the enrichment of Th17, Th1 and Th2 cells in the mammary gland mediated by pro-inflammatory cytokine production, which is tightly regulated by Treg cells and the anti-inflammatory cytokine IL-10.

16 December 2014 in Tropical Animal Health and Production
Verified
Journal Article
Closed access
PDF file
YZYanqing Zhao
Yanqing Zhao
HLHui Liu
Hui Liu
XZXuanduo Zhao
Xuanduo Zhao
YGYang Gao
Yang Gao
MZMiaotao Zhang
Miaotao Zhang
DCdekun chen
dekun chen

23 August 2023 in Microbial Pathogenesis
Verified
Journal Article
Closed access
SNSilu Ni
Silu Ni
XYXiulei Yuan
Xiulei Yuan
QCQihang Cao
Qihang Cao
YCYiming Chen
Yiming Chen
XPXingyu Peng
Xingyu Peng
DCdekun chen
dekun chen

19 May 2020 in Frontiers in Microbiology
Verified
Journal Article
Open access
PDF file
XYXiaoting Yao
Xiaoting Yao
QFQinlei Fan
Qinlei Fan
BYBo Yao
Bo Yao
PLPing Lu
Ping Lu
SRSiddiq Ur Rahman
Siddiq Ur Rahman
STShiheng Tao
Shiheng Tao
Bluetongue virus (BTV) is a double-stranded RNA virus with multiple segments and belongs to the genus Orbivirus within the family Reoviridae. BTV is spread to livestock through its dominant vector, biting midges of genus Culicoides. Although great progress has been made in genomic analyses, it is not fully understood how BTVs adapt to their hosts and evade the host’s immune systems. In this study, we retrieved BTV genome sequences from the National Center for Biotechnology Information (NCBI) database and performed a comprehensive research to explore the codon usage patterns in 50 BTV strains. We used bioinformatic approaches to calculate the relative synonymous codon usage (RSCU), codon adaptation index (CAI), effective number of codons (ENC), and other indices. The results indicated that most of the overpreferred codons had A-endings, which revealed that mutational pressure was the major force shaping codon usage patterns in BTV. However, the influence of natural selection and geographical factors cannot be ignored on viral codon usage bias. Based on the RSCU values, we performed a comparative analysis between BTVs and their hosts, suggesting that BTVs were inclined to evolve their codon usage patterns that were comparable to those of their hosts. Such findings will be conducive to understanding the elements that contribute to viral evolution and adaptation to hosts.

1 January 2014 in The Scientific World Journal
Verified
Journal Article
Open access
PDF file
RSRuiqin Sun
Ruiqin Sun
ZLZhangming Leng
Zhangming Leng
Shao-Lun ZhaiShao-Lun Zhai
Shao-Lun Zhai
DCdekun chen
dekun chen
CSChangxu Song
Changxu Song
Since late 2010, the outbreak of porcine epidemic diarrhea (PED) in China has resulted in the deaths of millions of suckling piglets. The main cause of the disease outbreak was unknown. In this study, partialspike(S),ORF3, andmembrane(M) genes amplified from these variants were sequenced and analyzed. The results showed that the variants could be clustered into one to three subgroups and suggested thatSgenes were variable, whileMgenes were relatively conserved. Moreover, in comparison with the vaccine strain CV777, sequence alignment analyses revealed that theSgenes of the newly isolated strains contained several mutations at the aa level. It is possible that these mutations have changed the hydrophobicity of the S protein and influenced the viral antigenicity and virulence. Interestingly, homology analyses based on ORF3 demonstrated that the isolates had an intact opening reading frame (ORF), which were different from the attenuated DR13 strain. In conclusion, the widespread PED virus (PEDV) isolates had virulent characteristics. Additionally, the high degree of variation in the genes, particularlySgenes, might provide an explanation for the poor immunity and rapid spread of the disease.