Jinwook Choi

Jinwook Choi


Research Focus & Metrics

Academic Career Length

27Years (2000-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 February 2020 in Journal of Clinical Medicine
Verified
Journal Article
Open access
PDF file
ki-sun Leeki-sun Lee
ki-sun Lee
Seok-Ki JungSeok-Ki Jung
Seok-Ki Jung
JRJae Jun Ryu
Jae Jun Ryu
SSSang-Wan Shin
Sang-Wan Shin
JCJinwook Choi
Jinwook Choi
Dental panoramic radiographs (DPRs) provide information required to potentially evaluate bone density changes through a textural and morphological feature analysis on a mandible. This study aims to evaluate the discriminating performance of deep convolutional neural networks (CNNs), employed with various transfer learning strategies, on the classification of specific features of osteoporosis in DPRs. For objective labeling, we collected a dataset containing 680 images from different patients who underwent both skeletal bone mineral density and digital panoramic radiographic examinations at the Korea University Ansan Hospital between 2009 and 2018. Four study groups were used to evaluate the impact of various transfer learning strategies on deep CNN models as follows: a basic CNN model with three convolutional layers (CNN3), visual geometry group deep CNN model (VGG-16), transfer learning model from VGG-16 (VGG-16_TF), and fine-tuning with the transfer learning model (VGG-16_TF_FT). The best performing model achieved an overall area under the receiver operating characteristic of 0.858. In this study, transfer learning and fine-tuning improved the performance of a deep CNN for screening osteoporosis in DPR images. In addition, using the gradient-weighted class activation mapping technique, a visual interpretation of the best performing deep CNN model indicated that the model relied on image features in the lower left and right border of the mandibular. This result suggests that deep learning-based assessment of DPR images could be useful and reliable in the automated screening of osteoporosis patients.

1 January 2021 in Medical Image Analysis
Verified
Journal Article
Open access
YKYoo Jung Kim
Yoo Jung Kim
HJHyungjoon Jang
Hyungjoon Jang
KLKyoungbun Lee
Kyoungbun Lee
SPSeongkeun Park
Seongkeun Park
SMSung-Gyu Min
Sung-Gyu Min
JCJinwook Choi
Jinwook Choi
Pathology Artificial Intelligence Platform (PAIP) is a free research platform in support of pathological artificial intelligence (AI). The main goal of the platform is to construct a high-quality pathology learning data set that will allow greater accessibility. The PAIP Liver Cancer Segmentation Challenge, organized in conjunction with the Medical Image Computing and Computer Assisted Intervention Society (MICCAI 2019), is the first image analysis challenge to apply PAIP datasets. The goal of the challenge was to evaluate new and existing algorithms for automated detection of liver cancer in whole-slide images (WSIs). Additionally, the PAIP of this year attempted to address potential future problems of AI applicability in clinical settings. In the challenge, participants were asked to use analytical data and statistical metrics to evaluate the performance of automated algorithms in two different tasks. The participants were given the two different tasks: Task 1 involved investigating Liver Cancer Segmentation and Task 2 involved investigating Viable Tumor Burden Estimation. There was a strong correlation between high performance of teams on both tasks, in which teams that performed well on Task 1 also performed well on Task 2. After evaluation, we summarized the top 11 team's algorithms. We then gave pathological implications on the easily predicted images for cancer segmentation and the challenging images for viable tumor burden estimation. Out of the 231 participants of the PAIP challenge datasets, a total of 64 were submitted from 28 team participants. The submitted algorithms predicted the automatic segmentation on the liver cancer with WSIs to an accuracy of a score estimation of 0.78. The PAIP challenge was created in an effort to combat the lack of research that has been done to address Liver cancer using digital pathology. It remains unclear of how the applicability of AI algorithms created during the challenge can affect clinical diagnoses. However, the results of this dataset and evaluation metric provided has the potential to aid the development and benchmarking of cancer diagnosis and segmentation.

1 November 2021 in IEEE Access
Verified
Journal Article
Open access
HPHyeryun Park
Hyeryun Park
KKKyungmo Kim
Kyungmo Kim
SPSeongkeun Park
Seongkeun Park
JCJinwook Choi
Jinwook Choi
The steadily increasing number of medical images places a tremendous burden on doctors, who toned to read and write reports. If an image captioning model could generate drafts of the reports from the corresponding images, the workload of doctors would be reduced, thereby saving time and expenses. The aim of this study was to develop a chest x-ray image captioning model that considers the differences between patient images and normal images, and uses hierarchical long short-term memory (LSTM) or a transformer as a decoder to generate reports. We investigated which feature representation method was the most appropriate for capturing the differences. The feature representations differed in terms of whether global average pooling was used for the visual feature vectors and how the feature difference vectors were generated. Experiments were conducted on two datasets using the proposed models and recent captioning models (X-LAN and X-Transformer). BLEU, METEOR, ROUGE-L, and CIDEr were used as evaluation metrics. The best model for most metric scores was the multi-difference non-average-pooling transformer model, which uses the transformer decoder, does not use global average pooling for the visual feature vectors, and applies the element-wise product. The transformer decoder was found to be more suitable than hierarchical LSTM. Furthermore, for models that do not condense features with global average pooling, the element-wise product was observed to be more effective than subtraction in expressing the feature differences.

8 July 2023 in Medical Image Analysis
Verified
Journal Article
Open access
KKKyungmo Kim
Kyungmo Kim
KLKyoungbun Lee
Kyoungbun Lee
SCSungduk Cho
Sungduk Cho
DKDong Un Kang
Dong Un Kang
SPSeongkeun Park
Seongkeun Park
JCJinwook Choi
Jinwook Choi
Microsatellite instability (MSI) refers to alterations in the length of simple repetitive genomic sequences. MSI status serves as a prognostic and predictive factor in colorectal cancer. The MSI-high status is a good prognostic factor in stage II/III cancer, and predicts a lack of benefit to adjuvant fluorouracil chemotherapy in stage II cancer but a good response to immunotherapy in stage IV cancer. Therefore, determining MSI status in patients with colorectal cancer is important for identifying the appropriate treatment protocol. In the Pathology Artificial Intelligence Platform (PAIP) 2020 challenge, artificial intelligence researchers were invited to predict MSI status based on colorectal cancer slide images. Participants were required to perform two tasks. The primary task was to classify a given slide image as belonging to either the MSI-high or the microsatellite-stable group. The second task was tumor area segmentation to avoid ties with the main task. A total of 210 of the 495 participants enrolled in the challenge downloaded the images, and 23 teams submitted their final results. Seven teams from the top 10 participants agreed to disclose their algorithms, most of which were convolutional neural network-based deep learning models, such as EfficientNet and UNet. The top-ranked system achieved the highest F1 score (0.9231). This paper summarizes the various methods used in the PAIP 2020 challenge. This paper supports the effectiveness of digital pathology for identifying the relationship between colorectal cancer and the MSI characteristics.

20 September 2021 in JMIR Medical Informatics
Verified
Journal Article
Open access
HYHyoungju Yun
Hyoungju Yun
JCJinwook Choi
Jinwook Choi
KHKi Jeong Hong
Ki Jeong Hong
Background: The emergency department (ED) triage system to classify and prioritize patients from high risk to less urgent continues to be a challenge. Objective: This study, comprising 80,433 patients, aims to develop a machine learning algorithm prediction model of critical care outcomes for adult patients using information collected during ED triage and compare the performance with that of the baseline model using the Korean Triage and Acuity Scale (KTAS). Methods: To predict the need for critical care, we used 13 predictors from triage information: age, gender, mode of ED arrival, the time interval between onset and ED arrival, reason of ED visit, chief complaints, systolic blood pressure, diastolic blood pressure, pulse rate, respiratory rate, body temperature, oxygen saturation, and level of consciousness. The baseline model with KTAS was developed using logistic regression, and the machine learning model with 13 variables was generated using extreme gradient boosting (XGB) and deep neural network (DNN) algorithms. The discrimination was measured by the area under the receiver operating characteristic (AUROC) curve. The ability of calibration with Hosmer–Lemeshow test and reclassification with net reclassification index were evaluated. The calibration plot and partial dependence plot were used in the analysis. Results: The AUROC of the model with the full set of variables (0.833-0.861) was better than that of the baseline model (0.796). The XGB model of AUROC 0.861 (95% CI 0.848-0.874) showed a higher discriminative performance than the DNN model of 0.833 (95% CI 0.819-0.848). The XGB and DNN models proved better reclassification than the baseline model with a positive net reclassification index. The XGB models were well-calibrated (Hosmer-Lemeshow test; P>.05); however, the DNN showed poor calibration power (Hosmer-Lemeshow test; P<.001). We further interpreted the nonlinear association between variables and critical care prediction. Conclusions: Our study demonstrated that the performance of the XGB model using initial information at ED triage for predicting patients in need of critical care outperformed the conventional model with KTAS.

1 September 2019 in Resuscitation
Verified
Journal Article
Closed access
KHKi Jeong Hong
Ki Jeong Hong
SSSang Do Shin
Sang Do Shin
Kyoung Jun SongKyoung Jun Song
Kyoung Jun Song
KHKi Jeong Hong
Ki Jeong Hong
YRYoung Sun Ro
Young Sun Ro
SCSae Won Choi
Sae Won Choi