Abir Chakraborty

Mr. Abir Chakraborty

Rhodes University, South Africa
orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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11 June 2020 in Journal of Biomolecular Structure and Dynamics
Verified
Journal Article
Closed access
SMSanam Maikoo
Sanam Maikoo
Abir ChakrabortyAbir Chakraborty
Abir Chakraborty
NVNyeleti Vukea
Nyeleti Vukea
LDLaura Margaret Kirkpatrick Dingle
Laura Margaret Kirkpatrick Dingle
WSWilliam John Samson
William John Samson
IBIrvin Noel Booysen
Irvin Noel Booysen
Deoxyribonucleic acid (DNA) and bovine serum albumin (BSA) binding interactions for a series of ruthenium heterocyclic complexes were monitored using ultraviolet-visible (UV-Vis) spectrophotometry, fluorescence emission spectroscopy and agarose gel electrophoresis. Investigations of the DNA interactions for the metal complexes revealed that they are groove-binders with intrinsic binding constants in the order of 104 – 107 M−1. Electronic spectrophotometric DNA titrations of the bis-heterocyclic metal complexes illustrated hypochromism of their intraligand electronic transitions and the presence of diffuse isosbestic points which are synonymous with homogeneous binding modes. Metal complexes with the mono-heterocyclic chelates also showed alterations in their intraligand transitions and changes in their metal-based electronic transitions which are suggestive of metal coordination to the CT-DNA structure. Using agarose gel electrophoresis assessments, Hoechst DNA binding competition studies corroborate that the metal complexes are DNA groove-binders. Optimal uptake of these metal complexes by BSA was observed based on their optimal apparent association and Stern-Volmer constants (Kapp and KSV > 104 M−1). Radical scavenging studies revealed that the metal complexes have high activities towards the neutralization of NO and DPPH radicals. Data attained from the BSA electronic spectrophotometric titrations for the majority of the metal complexes illustrated distinct hyperchromism accompanied with blue shifts which indicates unwinding of the protein strands. Predominately, the metal complexes showed moderate cytotoxicity against both triple-negative breast cancer and cervical cancer cell lines that was greater than that of 5-fluorouracil.

16 December 2021 in Biochemical Society Transactions
Verified
Journal Article
Closed access
PDF file
Abir ChakrabortyAbir Chakraborty
Abir Chakraborty
Adrienne Lesley EdkinsAdrienne Lesley Edkins
Adrienne Lesley Edkins
The extracellular matrix (ECM) is a dynamic and organised extracellular network assembled from proteins and carbohydrates exported from the cell. The ECM is critical for multicellular life, providing spatial and temporal cellular cues to maintain tissue homeostasis. Consequently, ECM production must be carefully balanced with turnover to ensure homeostasis; ECM dysfunction culminates in disease. Hsp90 is a molecular chaperone central to protein homeostasis, including in the ECM. Intracellular and extracellular Hsp90 isoforms collaborate to regulate the levels and status of proteins in the ECM via multiple mechanisms. In so doing, Hsp90 regulates ECM dynamics, and changes in Hsp90 levels or activity support the development of ECM-related diseases, like cancer and fibrosis. Consequently, Hsp90 levels may have prognostic value, while inhibition of Hsp90 may have therapeutic potential in conditions characterised by ECM dysfunction.

1 June 2019 in Inorganica Chimica Acta
Verified
Journal Article
Closed access
LGLarusha Gramni
Larusha Gramni
NVNyeleti Vukea
Nyeleti Vukea
Abir ChakrabortyAbir Chakraborty
Abir Chakraborty
WSWilliam John Samson
William John Samson
LDLaura Margaret Kirkpartick Dingle
Laura Margaret Kirkpartick Dingle
IBIrvin Noel Booysen
Irvin Noel Booysen

22 January 2020 in Cells
Verified
Journal Article
Open access
PDF file
Abir ChakrabortyAbir Chakraborty
Abir Chakraborty
NBNatasha Boel
Natasha Boel
Adrienne Lesley EdkinsAdrienne Lesley Edkins
Adrienne Lesley Edkins
Heat shock protein 90 (HSP90) is an evolutionarily conserved chaperone protein that controls the function and stability of a wide range of cellular client proteins. Fibronectin (FN) is an extracellular client protein of HSP90, and exogenous HSP90 or inhibitors of HSP90 alter the morphology of the extracellular matrix. Here, we further characterized the HSP90 and FN interaction. FN bound to the M domain of HSP90 and interacted with both the open and closed HSP90 conformations; and the interaction was reduced in the presence of sodium molybdate. HSP90 interacted with the N-terminal regions of FN, which are known to be important for matrix assembly. The highest affinity interaction was with the 30-kDa (heparin-binding) FN fragment, which also showed the greatest colocalization in cells and accommodated both HSP90 and heparin in the complex. The strength of interaction with HSP90 was influenced by the inherent stability of the FN fragments, together with the type of motif, where HSP90 preferentially bound the type-I FN repeat over the type-II repeat. Exogenous extracellular HSP90 led to increased incorporation of both full-length and 70-kDa fragments of FN into fibrils. Together, our data suggested that HSP90 may regulate FN matrix assembly through its interaction with N-terminal FN fragments.

1 July 2020 in Polyhedron
Verified
Journal Article
Closed access
SMSanam Maikoo
Sanam Maikoo
LDLaura Margaret Kirkpatrick Dingle
Laura Margaret Kirkpatrick Dingle
Abir ChakrabortyAbir Chakraborty
Abir Chakraborty
BXBheki Xulu
Bheki Xulu
AEAdrienne Lesley Edkins
Adrienne Lesley Edkins
IBIrvin Noel Booysen
Irvin Noel Booysen

2 September 2024 in RSC Medicinal Chemistry
Verified
Journal Article
Open access
PDF file
GMGciniwe S Mathenjwa
Gciniwe S Mathenjwa
Abir ChakrabortyAbir Chakraborty
Abir Chakraborty
ACAbantika Chakraborty
Abantika Chakraborty
RMRonel Muller
Ronel Muller
MAMathew P Akerman
Mathew P Akerman
CVClinton Veale
Clinton Veale
Rationally modified Hsp90 inhibitors which retained of on-target activity but showed no engagement of intracellular Hsp90, or stimulation of the heat shock response, were found to significantly alter the extracellular fibronectin network.