The socio-economic, environmental, and health implications of diseases caused by pathogenic microorganisms and their treatment using conventional antimicrobials are significant. The increasing resistance to antibiotics and detrimental biological side effects of many common antibiotics on human health and on the ecosystem have driven the search for new cost-effective and highly-efficient sterilization treatments and agents that are more environmentally benign. Plasma activated water (PAW), a product of cold atmospheric plasma reacting with water, is a promising broad-spectrum biocidal agent whose biochemical activity is attributed to the presence of a rich diversity of highly reactive oxygen and nitrogen species (RONS). The transient activity of PAW, where PAW reverts to water within days of storage and application, suggests that it can become a green alternative to conventional chemical treatment methods, yet the issues of scale up and the not fully understood mechanism of activity remain. In this study, we sought to explore the antibiotic potential of PAW generated from a plasma jet in a continuous flow reactor and determine the individual and combined contribution of thus-generated reactive chemistries in PAW for organism inactivation. Treatment of Escherichia coli with PAW led to more than a 4-log reduction, while exposure to an equivalent single dose of hydrogen peroxide (H₂O₂), nitrate (NO₃ ⁻) or nitrite (NO₂ ⁻) to that found in PAW failed to attain the same level of reduction. Peroxynitrite was identified as a critical bioactive species, particularly under acidic conditions, originating from the synergistic plasma effects (like the reactions of H₂O₂, NO₃ ⁻, NO₂ ⁻ and other existing short-lived species like OH radicals in PAW). This research successfully demonstrated the possibility of PAW being an effective environmentally benign disinfectant, the activity of which is closely linked to the generation of peroxynitrite, providing much needed insights into the fundamental aspects of PAW chemistry required for optimisation of the biochemical activity of PAW and translation of this decontamination strategy into real life applications.

Gas fermentation using acetogenic bacteria offers a promising route for the sustainable production of low carbon fuels and commodity chemicals from abundant, inexpensive C1 feedstocks including industrial waste gases, syngas, reformed methane or methanol. Clostridium autoethanogenum is a model gas fermenting acetogen that produces fuel ethanol and 2,3-butanediol, a precursor for nylon and rubber. Acetogens have already been used in large scale industrial fermentations, they are ubiquitous and known to play a prominent role in the global carbon cycle. Still, they are considered to live on the thermodynamic edge of life and potential energy constraints when growing on C1 gases pose a major challange for the commercial production of fuels and chemicals. We have developed a systematic platform to investigate acetogenic energy metabolism, exemplified here by experiments contrasting heterotrophic and autotrophic metabolism. The platform is built from complete omics technologies, augmented with genetic tools and complemented by a manually curated genome-scale mathematical model. Together the tools enable the design and development of new, energy efficient pathways and strains for the production of chemicals and advanced fuels via C1 gas fermentation. As a proof-of-platform, we investigated heterotrophic growth on fructose versus autotrophic growth on gas that demonstrate the role of the Rnf complex and Nfn complex in maintaining growth using the Wood–Ljungdahl pathway. Pyruvate carboxykinase was found to control the rate-limiting step of gluconeogenesis and a new specialized glyceraldehyde-3-phosphate dehydrogenase was identified that potentially enhances anabolic capacity by reducing the amount of ATP consumed by gluconeogenesis. The results have been confirmed by the construction of mutant strains.