Soils with highly uniform textural, physical, and chemical characteristics still give rise to crop stand variability. Seed quality is one of the factors adding to yield variability and has become a concern for corn growers. Hybrid seed producers claim that their seeds provide a uniformity in crop emergence and productivity, but they do not always provide detailed studies to support this claim. Based on growers’ concerns, we examined fields planted with three different hybrid varieties and found that 25% to 50% of the stand had relatively weak vigor, where seed variety A showed 15% of seedlings with lower vigor, and varieties B and C had 30% of seedlings with low vigor. These apparent differences in plant vigor prompted us to initiate a cursory investigation to identify how seed size influenced seedling vigor and if the seedling’s microbial profile played a role in the early growth stages of three commonly grown corn hybrids in Ontario. Seeds were separated based on size, prior to conducting a growth room study. Different sizes of seeds from the same seed lot showed significant differences in vigor capacity and related biometric components. Significant differences were also found in their nutritional composition and microbial profiles within the different seed sizes and the roots and shoots of seedlings derived from such seeds. The results clearly indicate that seed size greatly impacts the plant growth and its microbiome, resulting in seedlings with different plant vigor, microbiomes, and performance.

The metabarcoding of prokaryotic and fungal (Ascomycota only) ribosomal DNA was used to describe the microbial communities in soils of a remnant equatorial rainforest, maize–bean intercrop, and sugarcane in western Kenya. Cropping systems influenced the microbial community composition and functional traits (energy source and nutrient cycling) of bulk soil in each crop. Microbial richness and diversity tended to increase with cultivation intensity. The soil of the maize–bean intercrop had lower percentages and sugarcane had higher percentages of unique amplicon sequence variants of both bacteria and fungi compared to the remnant forest. Functional traits were altered by cultivation intensity. Compared to remnant forest soils, maize–bean intercrop soil had lower percentages of aerobic chemoheterotrophic bacteria and higher percentages of N-cycling bacteria, while sugarcane had higher percentages of aerobic chemoheterotrophic bacteria and lower percentages of N-cycling bacteria. In the face of increasing forest loss and pressures for agricultural productivity, this landscape provides a rich site for studying the impacts of cropping systems on soil health.

Metabarcoding of prokaryotic and fungal ribosomal DNA was used to describe the microbial communities in soils of remnant equatorial rainforest, maize-bean intercrop, and sugarcane in western Kenya. Cropping systems influenced the microbial community composition and functional traits (energy source and nutrient cycling) of bulk soil in each crop. Microbial richness and diversity tended to increase with cultivation intensity. Soil of maize-bean intercrop had lower percentages and sugarcane had higher percentages of unique amplicon sequence variants of both bacteria and fungi compared to the remnant forest. Functional traits were altered by cultivation intensity. Compared to remnant forest soils, maize-bean intercrop soil had lower percentages of aerobic chemoheterotrophic bacteria and higher percentages of N-cycling bacteria, while sugarcane had higher percentages of aerobic chemoheterotrophic bacteria and lower percentages of N-cycling bacteria. In the face of increasing forest loss and pressures for agricultural productivity, this landscape provides a rich site for studying the impacts of cropping systems on soil health.