Dongyeop Kim

Dr. Dongyeop Kim

Department of Preventive Dentistry, School of Dentistry, Jeonbuk National University, 567 Baekje-daero, Deokjin-gu, Jeonju 54896, Korea
orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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31 July 2018 in Nature Communications
Verified
Journal Article
Open access
PDF file
YLYuan Liu
Yuan Liu
PNPratap C. Naha
Pratap C. Naha
Geelsu HwangGeelsu Hwang
Geelsu Hwang
Dongyeop KimDongyeop Kim
Dongyeop Kim
YHYue Huang
Yue Huang
HKHyun Koo
Hyun Koo
Ferumoxytol is a nanoparticle formulation approved by the U.S. Food and Drug Administration for systemic use to treat iron deficiency. Here, we show that, in addition, ferumoxytol disrupts intractable oral biofilms and prevents tooth decay (dental caries) via intrinsic peroxidase-like activity. Ferumoxytol binds within the biofilm ultrastructure and generates free radicals from hydrogen peroxide (H2O2), causing in situ bacterial death via cell membrane disruption and extracellular polymeric substances matrix degradation. In combination with low concentrations of H2O2, ferumoxytol inhibits biofilm accumulation on natural teeth in a human-derived ex vivo biofilm model, and prevents acid damage of the mineralized tissue. Topical oral treatment with ferumoxytol and H2O2 suppresses the development of dental caries in vivo, preventing the onset of severe tooth decay (cavities) in a rodent model of the disease. Microbiome and histological analyses show no adverse effects on oral microbiota diversity, and gingival and mucosal tissues. Our results reveal a new biomedical application for ferumoxytol as topical treatment of a prevalent and costly biofilm-induced oral disease.

18 April 2018 in The ISME Journal
Verified
Journal Article
Open access
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Dongyeop KimDongyeop Kim
Dongyeop Kim
YLYuan Liu
Yuan Liu
Raphael BenhamouRaphael Benhamou
Raphael Benhamou
HSHiram Sanchez
Hiram Sanchez
ASAurea Simon-Soro
Aurea Simon-Soro
HKHyun Koo
Hyun Koo
Fungal–bacterial interactions generate unique biofilms that cause many infections in humans. Candida albicans interact with Streptococcus mutans in dental biofilms associated with severe childhood tooth-decay, a prevalent pediatric oral disease. Current modalities are ineffective and primarily based on antimicrobial monotherapies despite the polymicrobial nature of the infection. Here, we show that the combination of clinically used topical antifungal fluconazole with povidone iodine (PI) can completely suppress C. albicans carriage and mixed-biofilm formation without increasing bacterial killing activity in vivo. We unexpectedly found that the inclusion of PI enhanced fluconazole efficacy by potently disrupting the assembly of a protective bacterial exopolysaccharide (EPS) matrix through inhibition of α-glucan synthesis by S. mutans exoenzyme (GtfB) bound on the fungal surface. Further analyses revealed that the EPS produced in situ directly bind and sequester fluconazole, reducing uptake and intracellular transportation of the drug. Conversely, inhibition of GtfB activity by PI, enzymatic degradation of the α-glucan matrix or co-culturing with gtfB-defective S. mutans re-established antifungal susceptibility. Hence, topical antifungal has limitations in mixed oral biofilms due to enhanced C. albicans tolerance to fluconazole afforded by the shielding effect of bacterial-derived EPS. The data provide new insights for treatment of C. albicans in cross-kingdom biofilms, indicating that EPS inhibitors may be required for enhanced killing efficacy and optimal anti-biofilm activity.

29 September 2023 in Nature Communications
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Journal Article
Open access
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YHYue Huang
Yue Huang
YLYuan Liu
Yuan Liu
NPNil Pandey
Nil Pandey
SSShrey Shah
Shrey Shah
ASAurea Simon-Soro
Aurea Simon-Soro
HKHyun Koo
Hyun Koo
Dental caries is the most common human disease caused by oral biofilms despite the widespread use of fluoride as the primary anticaries agent. Recently, an FDA-approved iron oxide nanoparticle (ferumoxytol, Fer) has shown to kill and degrade caries-causing biofilms through catalytic activation of hydrogen peroxide. However, Fer cannot interfere with enamel acid demineralization. Here, we show notable synergy when Fer is combined with stannous fluoride (SnF2), markedly inhibiting both biofilm accumulation and enamel damage more effectively than either alone. Unexpectedly, we discover that the stability of SnF2 is enhanced when mixed with Fer in aqueous solutions while increasing catalytic activity of Fer without any additives. Notably, Fer in combination with SnF2 is exceptionally effective in controlling dental caries in vivo, even at four times lower concentrations, without adverse effects on host tissues or oral microbiome. Our results reveal a potent therapeutic synergism using approved agents while providing facile SnF2 stabilization, to prevent a widespread oral disease with reduced fluoride exposure.

28 February 2023 in mBio
Verified
Journal Article
Open access
ZXZhenting Xiang
Zhenting Xiang
RWRohan S. Wakade
Rohan S. Wakade
ARApoena Aguiar Ribeiro
Apoena Aguiar Ribeiro
WHWeiming Hu
Weiming Hu
KBKyle Bittinger
Kyle Bittinger
HKHyun Koo
Hyun Koo
Severe early childhood caries is a widespread global public health problem causing extensive tooth decay and systemic complications. Candida albicans , a fungus typically found in mucosal surfaces, is frequently detected in dental plaque formed on teeth of diseased toddlers. However, the clinical traits of C. albicans isolated from tooth remain underexplored.


11 October 2022 in Molecular Oral Microbiology
Verified
Journal Article
Closed access
Dongyeop KimDongyeop Kim
Dongyeop Kim
TITatsuro Ito
Tatsuro Ito
AHAnderson Hara
Anderson Hara
YLYong Li
Yong Li
JKJens Kreth
Jens Kreth
HKHyun Koo
Hyun Koo