Jothi Kumar Yuvaraj

Dr. Jothi Kumar Yuvaraj


Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 August 2017 in Molecular Biology and Evolution
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Journal Article
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JYJothi Kumar Yuvaraj
Jothi Kumar Yuvaraj
JCJacob A. Corcoran
Jacob A. Corcoran
MAMartin N. Andersson
Martin N. Andersson
RNRichard D. Newcomb
Richard D. Newcomb
OAOlle Anderbrant
Olle Anderbrant
CLChrister Löfstedt
Christer Löfstedt
Pheromone receptors (PRs) are essential in moths to detect sex pheromones for mate finding. However, it remains unknown from which ancestral proteins these specialized receptors arose. The oldest lineages of moths, so-called non-ditrysian moths, use short-chain pheromone components, secondary alcohols, or ketones, so called Type 0 pheromones that are similar to many common plant volatiles. It is, therefore, possible that receptors for these ancestral pheromones evolved from receptors detecting plant volatiles. Hence, we identified the odorant receptors (ORs) from a non-ditrysian moth, Eriocrania semipurpurella (Eriocraniidae, Lepidoptera), and performed functional characterization of ORs using HEK293 cells. We report the first receptors that respond to Type 0 pheromone compounds; EsemOR3 displayed highest sensitivity toward (2S, 6Z)-6-nonen-2-ol, whereas EsemOR5 was most sensitive to the behavioral antagonist (Z)-6-nonen-2-one. These receptors also respond to plant volatiles of similar chemical structures, but with lower sensitivity. Phylogenetically, EsemOR3 and EsemOR5 group with a plant volatile-responding receptor from the tortricid moth Epiphyas postvittana (EposOR3), which together reside outside the previously defined lepidopteran PR clade that contains the PRs from more derived lepidopteran families. In addition, one receptor (EsemOR1) that falls at the base of the lepidopteran PR clade, responded specifically to β-caryophyllene and not to any other additional plant or pheromone compounds. Our results suggest that PRs for Type 0 pheromones have evolved from ORs that detect structurally-related plant volatiles. They are unrelated to PRs detecting pheromones in more derived Lepidoptera, which, in turn, also independently may have evolved a novel function from ORs detecting plant volatiles.

1 March 2012 in Plant Disease
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Journal Article
Open access
JMJ. E. Munyaneza
J. E. Munyaneza
VSV. G. Sengoda
V. G. Sengoda
RSR. Stegmark
R. Stegmark
AAA. K. Arvidsson
A. K. Arvidsson
OAO. Anderbrant
O. Anderbrant
ANA. Nissinen
A. Nissinen
Carrot (Daucus carota) plants with symptoms resembling those associated with the carrot psyllid Trioza apicalis and the bacterium “Candidatus Liberibacter solanacearum” (1–4) were observed in 70% of commercial fields in southern Sweden in August 2011, with approximately 1 to 45% symptomatic plants per field. T. apicalis, a pest of carrot in northern and central Europe, including Sweden, can cause as much as 100% crop loss and is associated with “Ca. L. solanacearum” (1–4). Symptoms on affected plants include leaf curling, yellow and purple discoloration of leaves, stunted growth of shoots and roots, and proliferation of secondary roots (3). Carrot plant and psyllid samples were collected from fields in the province of Halland. Total DNA was extracted from petiole and root tissues of 33 symptomatic and 16 asymptomatic plants (cvs. Nevis and Florida), with the cetyltrimethylammonium bromide (CTAB) buffer extraction method (2,3). DNA was also extracted from 155 psyllids (3). DNA samples were tested by PCR using primer pairs OA2/OI2c (5′'-GCGCTTATTTTTAATAGGAGCGGCA-3′/5′-GCCTCGCGACTTCGCAACCCAT-3′) and CL514F/R (5′-CTCTAAGATTTCGGTTGGTT-3′/5′-TATATCTATCGTTGCACCAG-3′), to amplify a portion of 16S rDNA and rplJ/rplL ribosomal protein genes, respectively, of “Ca. L. solanacearum” (2,3). A 1,168-bp 16S rDNA fragment was detected in the DNA from all 33 symptomatic and two asymptomatic plants, and a 668-bp rplJ/rplL fragment was amplified from the DNA of all 33 symptomatic and four asymptomatic plants, indicating the presence of liberibacter. DNA from 23 and 49 psyllid samples yielded similar amplicons with OA2/OI2c and CL514F/R primer pairs, respectively. Amplicons from the DNA of four carrot roots and three T. apicalis with each primer pair were cloned (pCR2.1-TOPO; Invitrogen, Carlsbad, CA) and three clones of each of the 14 amplicons were sequenced (MCLAB, San Francisco, CA). BLAST analysis of the 16S rDNA consensus sequences from carrot (GenBank Accession No. JN863095) and T. apicalis (GenBank Accession No. NJ863096) showed 100% identity to those of “Ca. L. solanacearum” previously amplified from carrot (GU373048 and GU373049) and T. apicalis (GU477254 and GU477255) from Finland (2,3). The rplJ/rplL consensus sequences from carrot (GenBank Accession No. JN863093) and T. apicalis (GenBank Accession No. JN863094) were 99% identical to the sequences of rplJ/rplL “Ca. L. solanacearum” ribosomal protein gene from carrots in Finland (GU373050 and GU373051). To our knowledge, this is the first report of “Ca. L. solanacearum” associated with carrot and T. apicalis in Sweden. The disease associated with this bacterium caused millions of dollars in losses to potato and several other solanaceous crops in North and Central America and New Zealand (1). This plant pathogen is also associated with significant economic damage to carrot crops observed in Finland (2,3). References: (1) J. E. Munyaneza. Southwest. Entomol. 35:471, 2010. (2) J. E. Munyaneza et al. Plant Dis. 94:639, 2010. (3) J. E. Munyaneza et al. J. Econ. Entomol. 103:1060, 2010. (4) A. Nissinen et al. Entomol. Exp. Appl. 125:277, 2007.

1 February 2020 in Insect Biochemistry and Molecular Biology
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Journal Article
Open access
XHXiaoqing Hou
Xiaoqing Hou
DZDan-Dan Zhang
Dan-Dan Zhang
JYJothi Kumar Yuvaraj
Jothi Kumar Yuvaraj
JCJacob A. Corcoran
Jacob A. Corcoran
MAMartin N. Andersson
Martin N. Andersson
CLChrister Löfstedt
Christer Löfstedt
The Xenopus oocyte and the Human Embryonic Kidney (HEK) 293 cell expression systems are frequently used for functional characterization (deorphanization) of insect odorant receptors (ORs). However, the inherent characteristics of these heterologous systems differ in several aspects, which raises the question of whether the two systems provide comparable results, and how well the results correspond to the responses obtained from olfactory sensory neurons in vivo. Five candidate pheromone receptors were previously identified in the primitive moth Eriocrania semipurpurella (Esem) and their responses were characterized in HEK cells. We re-examined the responses of these five EsemORs in Xenopus oocytes. We showed that in both systems, EsemOR1 specifically responded to the plant volatile β-caryophyllene. EsemOR3 responded stronger to the pheromone component (S,Z)-6-nonen-2-ol than to its enantiomer (R,Z)-6-nonen-2-ol, the second pheromone component. However, EsemOR3 also responded secondarily to the plant volatile β-caryophyllene in the oocyte system, but not in the HEK cell system. EsemOR4 was unresponsive in the HEK cells, but responded primarily to (R,Z)-6-nonen-2-ol followed by (S,Z)-6-nonen-2-ol in the oocytes, representing a discovery of a new pheromone receptor in this species. EsemOR5 was broadly tuned in both systems, but the rank order among the most active pheromone compounds and antagonists was different. EsemOR6 showed no response to any compound in either system. We compared the results obtained in the two different heterologous systems with the activity previously recorded in vivo, and performed in situ hybridization to localize the expression of these OR genes in the antennae. In spite of similar results overall, differences in OR responses between heterologous expression systems suggest that conclusions about the function of individual ORs may differ depending on the system used for deorphanization.

1 August 2018 in Micron
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Journal Article
Open access
JYJothi Kumar Yuvaraj
Jothi Kumar Yuvaraj
MAMartin N. Andersson
Martin N. Andersson
OAOlle Anderbrant
Olle Anderbrant
CLChrister Löfstedt
Christer Löfstedt
The antenna is the main sensory organ of insects, housing different types of sensilla dedicated to detect chemical cues, motion, humidity and temperature. Sensilla are divided into different types based on their wall structure and morphology. Among the olfactory sensilla, there is an enormous variation in the numbers and morphological types present in different insect taxa. The reasons for this variation remain obscure, though there may be a correlation between sensillum morphology and the characteristics of the stimulus that the olfactory sensory neurons inside the sensillum detect. Here, we report the first comparative analysis of the morphology and ultrastructure of sensilla from Rhyacophila nubila (Rhyacophilidae: Trichoptera) and three species of Lepidoptera, Eriocrania semipurpurella (Eriocraniidae), Lampronia capitella (Prodoxidae), and Bicyclus anynana (Nymphalidae), which use different chemical types of pheromones. Our results, together with a thorough literature review, suggest a shift in major types of olfactory sensilla, from a high proportion of sensilla placodea or auricillica in Trichoptera and the most basal moth lineages (including Eriocraniidae), respectively, to sensilla trichodea in the more derived Lepidoptera (including Prodoxidae and the Ditrysia clade), which parallels the change in the types of sex pheromones used.

1 September 2018 in Insect Biochemistry and Molecular Biology
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Journal Article
Open access
JYJothi Kumar Yuvaraj
Jothi Kumar Yuvaraj
MAMartin N. Andersson
Martin N. Andersson
JCJacob A. Corcoran
Jacob A. Corcoran
Olle AnderbrantOlle Anderbrant
Olle Anderbrant
CLChrister Löfstedt
Christer Löfstedt
The odorant receptors (ORs) of insects are crucial for host and mate recognition. In moths (Lepidoptera), specialized ORs are involved in male detection of the sex pheromone produced by females. Most moth sex pheromones are C-10-C-18 acetates, alcohols, and aldehydes (Type I pheromones), and most pheromone receptors (PRs) characterized to date are from higher Lepidoptera (Ditrysia), responding to these types of compounds. With few exceptions, functionally characterized PRs fall into what has been called the "PR-Glade", which also contains receptors that have yet to be characterized. While it has been suggested that moth PRs have evolved from plant odor-detecting ORs, it is not known when receptors for Type I pheromones arose. This is largely due to a lack of functionally characterized PRs from non-ditrysian Lepidoptera. The currant shoot borer moth, Lampronia capitella (Prodoxidae), belongs to a non-ditrysian lineage, and uses Type I pheromone compounds. We identified 53 ORs from antennal transcriptomes of this species, and analyzed their phylogenetic relationships with known lepidopteran ORs. Using a HEK293 cell-based assay, we showed that three of the LcapORs with male-biased expression (based on FPKM values) respond to Type I pheromone compounds. Two of them responded to pheromone components of L. capitella and one to a structurally related compound. These PRs are the first from a non-ditrysian moth species reported to respond to Type I compounds. They belong to two of the more early-diverging subfamilies of the PR-clade for which a role in pheromone detection had not previously been demonstrated. Hence, our definition of the monophyletic lepidopteran PR-clade includes these receptors from a non-ditrysian species, based on functional support.

1 February 2022 in Insect Biochemistry and Molecular Biology
Verified
Journal Article
Closed access
JYJothi Kumar Yuvaraj
Jothi Kumar Yuvaraj
Melissa JordanMelissa Jordan
Melissa Jordan
DZDan-Dan Zhang
Dan-Dan Zhang
MAMartin N. Andersson
Martin N. Andersson
CLChrister Löfstedt
Christer Löfstedt
Jacob CorcoranJacob Corcoran
Jacob Corcoran