MANINDRA Bera

Dr. MANINDRA Bera

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Research Focus & Metrics

Academic Career Length

13Years (2014-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 May 2020 in eLife
Verified
Journal Article
Open access
SRSathish Ramakrishnan
Sathish Ramakrishnan
MBMANINDRA Bera
MANINDRA Bera
JCJeff Coleman
Jeff Coleman
JRJames E Rothman
James E Rothman
SKShyam Krishnakumar
Shyam Krishnakumar
Calcium (Ca2+)-evoked release of neurotransmitters from synaptic vesicles requires mechanisms both to prevent un-initiated fusion of vesicles (clamping) and to trigger fusion following Ca2+-influx. The principal components involved in these processes are the vesicular fusion machinery (SNARE proteins) and the regulatory proteins, Synaptotagmin-1 and Complexin. Here, we use a reconstituted single-vesicle fusion assay under physiologically-relevant conditions to delineate a novel mechanism by which Synaptotagmin-1 and Complexin act synergistically to establish Ca2+-regulated fusion. We find that under each vesicle, Synaptotagmin-1 oligomers bind and clamp a limited number of ‘central’ SNARE complexes via the primary interface and introduce a kinetic delay in vesicle fusion mediated by the excess of free SNAREpins. This in turn enables Complexin to arrest the remaining free ‘peripheral’ SNAREpins to produce a stably clamped vesicle. Activation of the central SNAREpins associated with Synaptotagmin-1 by Ca2+ is sufficient to trigger rapid (<100 msec) and synchronous fusion of the docked vesicles.

20 December 2018 in FEBS Letters
Verified
Journal Article
Open access
PDF file
SRSathish Ramakrishnan
Sathish Ramakrishnan
MBMANINDRA Bera
MANINDRA Bera
JCJeff Coleman
Jeff Coleman
SKShyam S. Krishnakumar
Shyam S. Krishnakumar
FPFrédéric Pincet
Frédéric Pincet
JRJames E. Rothman
James E. Rothman
The buttressed‐ring hypothesis, supported by recent cryo‐electron tomography analysis of docked synaptic‐like vesicles in neuroendocrine cells, postulates that prefusion SNAREpins are stabilized and organized by Synaptotagmin (Syt) ring‐like oligomers. Here, we use a reconstituted single‐vesicle fusion analysis to test the prediction that destabilizing the Syt1 oligomers destabilizes the clamp and results in spontaneous fusion in the absence of Ca2+. Vesicles in which Syt oligomerization is compromised by a ring‐destabilizing mutation dock and diffuse freely on the bilayer until they fuse spontaneously, similar to vesicles containing only v‐SNAREs. In contrast, vesicles containing wild‐type Syt are immobile as soon as they attach to the bilayer and remain frozen in place, up to at least 1 h until fusion is triggered by Ca2+.

1 July 2020 in Autophagy
Verified
Journal Article
Closed access
DMDebdatto Mookherjee
Debdatto Mookherjee
SDSubhrangshu Das
Subhrangshu Das
RMRukmini Mukherjee
Rukmini Mukherjee
MBMANINDRA Bera
MANINDRA Bera
SJSwadhin Chandra Jana
Swadhin Chandra Jana
OCOishee Chakrabarti
Oishee Chakrabarti
Turnover of cellular organelles, including endoplasmic reticulum (ER) and mitochondria, is orchestrated by an efficient cellular surveillance system. We have identified a mechanism for dual regulat...

20 April 2022 in eLife
Verified
Journal Article
Open access
MBMANINDRA Bera
MANINDRA Bera
SRSathish Ramakrishnan
Sathish Ramakrishnan
JCJeff Coleman
Jeff Coleman
SKShyam Krishnakumar
Shyam Krishnakumar
JRJames E Rothman
James E Rothman
Previously we reported that Synaptotagmin-1 and Complexin synergistically clamp the SNARE assembly process to generate and maintain a pool of docked vesicles that fuse rapidly and synchronously upon Ca2+ influx (Ramakrishnan et al., 2020). Here, using the same in vitro single-vesicle fusion assay, we determine the molecular details of the Complexin-mediated fusion clamp and its role in Ca2+-activation. We find that a delay in fusion kinetics, likely imparted by Synaptotagmin-1, is needed for Complexin to block fusion. Systematic truncation/mutational analyses reveal that continuous alpha-helical accessory-central domains of Complexin are essential for its inhibitory function and specific interaction of the accessory helix with the SNAREpins enhances this functionality. The C-terminal domain promotes clamping by locally elevating Complexin concentration through interactions with the membrane. Independent of their clamping functions, the accessory-central helical domains of Complexin also contribute to rapid Ca2+-synchronized vesicle release by increasing the probability of fusion from the clamped state.

7 November 2014 in Biochemistry
Verified
Journal Article
Closed access
MBMANINDRA Bera
MANINDRA Bera
HKHema Chandra Kotamarthi
Hema Chandra Kotamarthi
SDSubarna Dutta
Subarna Dutta
ARAngana Ray
Angana Ray
SGSaptaparni Ghosh
Saptaparni Ghosh
KSKaushik Sengupta
Kaushik Sengupta

15 June 2016 in Scientific Reports
Verified
Journal Article
Open access
PDF file
MBMANINDRA Bera
MANINDRA Bera
SASri Rama Koti Ainavarapu
Sri Rama Koti Ainavarapu
KSKaushik Sengupta
Kaushik Sengupta
Nuclear lamins are type V intermediate filament proteins which form an elastic meshwork underlying the inner nuclear membrane. Lamins directly contribute to maintain the nuclear shape and elasticity. More than 400 mutations have been reported in lamin A that are involved in diseases known as laminopathies. These mutations are scattered mainly in the lamin rod domain along with some in its C-terminal domain. The contribution of the rod domain towards the elasticity of lamin A molecule was hitherto unknown. Here, we have elucidated the significance of the 1B and 2B domains of the rod in modulating the elastic behavior of lamin A by single-molecule force spectroscopy. In addition, we have also studied the network forming capacity of these domains and their corresponding viscoelastic behavior. We have shown that the 1B domain has the ability to form a lamin-like network and resists larger deformation. However at the single-molecular level, both the domains have comparable mechanical properties. The self-assembly of the 1B domain contributes to the elasticity of the lamin A network.