Recent advances in understanding photosynthetic responses to dynamic light environments reveal opportunities to improve crop plant photosynthetic efficiency.

Gas exchange measurements enable mechanistic insights into the processes that underpin carbon and water fluxes in plant leaves which in turn inform understanding of related processes at a range of scales from individual cells to entire ecosytems. Given the importance of photosynthesis for the global climate discussion it is important to (a) foster a basic understanding of the fundamental principles underpinning the experimental methods used by the broad community, and (b) ensure best practice and correct data interpretation within the research community. In this review, we outline the biochemical and biophysical parameters of photosynthesis that can be investigated with gas exchange measurements and we provide step‐by‐step guidance on how to reliably measure them. We advise on best practices for using gas exchange equipment and highlight potential pitfalls in experimental design and data interpretation. The Supporting Information contains exemplary data sets, experimental protocols and data‐modelling routines. This review is a community effort to equip both the experimental researcher and the data modeller with a solid understanding of the theoretical basis of gas‐exchange measurements, the rationale behind different experimental protocols and the approaches to data interpretation.

Photosynthesis captures light energy to produce ATP and NADPH. These molecules are consumed in the conversion of CO₂ to sugar, photorespiration, and NO₃⁻ assimilation. The production and consumption of ATP and NADPH must be balanced to prevent photoinhibition or photodamage. This balancing may occur via cyclic electron flow around photosystem I (CEF), which increases ATP/NADPH production during photosynthetic electron transport; however, it is not clear under what conditions CEF changes with ATP/NADPH demand. Measurements of chlorophyll fluorescence and dark interval relaxation kinetics were used to determine the contribution of CEF in balancing ATP/NADPH in hydroponically grown Arabidopsis (Arabidopsis thaliana) supplied different forms of nitrogen (nitrate versus ammonium) under changes in atmospheric CO₂ and oxygen. Measurements of CEF were made under low and high light and compared with ATP/NADPH demand estimated from CO₂ gas exchange. Under low light, contributions of CEF did not shift despite an up to 17% change in modeled ATP/NADPH demand. Under high light, CEF increased under photorespiratory conditions (high oxygen and low CO₂), consistent with a primary role in energy balancing. However, nitrogen form had little impact on rates of CEF under high or low light. We conclude that, according to modeled ATP/NADPH demand, CEF responded to energy demand under high light but not low light. These findings suggest that other mechanisms, such as the malate valve and the Mehler reaction, were able to maintain energy balance when electron flow was low but that CEF was required under higher flow.

An empirically parameterized model of canopy photosynthesis in soybeans reveals that leaf chlorophyll can be reduced with significant nitrogen savings and only

Respiration in the light (R_L) releases CO₂ in photosynthesizing leaves and is a phenomenon that occurs independently from photorespiration. Since R_L lowers net carbon fixation, understanding R_L could help improve plant carbon-use efficiency and models of crop photosynthesis. Although R_L was identified more than 75 years ago, its biochemical mechanisms remain unclear. To identify reactions contributing to R_L, we mapped metabolic fluxes in photosynthesizing source leaves of the oilseed crop and model plant camelina (Camelina sativa). We performed a flux analysis using isotopic labeling patterns of central metabolites during ¹³CO₂ labeling time course, gas exchange, and carbohydrate production rate experiments. To quantify the contributions of multiple potential CO₂ sources with statistical and biological confidence, we increased the number of metabolites measured and reduced biological and technical heterogeneity by using single mature source leaves and quickly quenching metabolism by directly injecting liquid N₂; we then compared the goodness-of-fit between these data and data from models with alternative metabolic network structures and constraints. Our analysis predicted that R_L releases 5.2 μmol CO₂ g⁻¹ FW h⁻¹ of CO₂, which is relatively consistent with a value of 9.3 μmol CO₂ g⁻¹ FW h⁻¹ measured by CO₂ gas exchange. The results indicated that ≤10% of R_L results from TCA cycle reactions, which are widely considered to dominate R_L. Further analysis of the results indicated that oxidation of glucose-6-phosphate to pentose phosphate via 6-phosphogluconate (the G6P/OPP shunt) can account for >93% of CO₂ released by R_L.