Girmaw Abebe Tadesse

Dr. Girmaw Abebe Tadesse


Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
17 August 2022 in Nature Machine Intelligence
Verified
Journal Article
Closed access
PDF file
WLWeixin Liang
Weixin Liang
GTGirmaw Abebe Tadesse
Girmaw Abebe Tadesse
DHDaniel Ho
Daniel Ho
LFL. Fei-Fei
L. Fei-Fei
MZMatei Zaharia
Matei Zaharia
JZJames Y Zou
James Y Zou

27 April 2020 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Open access
DKDani Kiyasseh
Dani Kiyasseh
GTGirmaw Abebe Tadesse
Girmaw Abebe Tadesse
LNLe Nguyen Thanh Nhan
Le Nguyen Thanh Nhan
LTLe Van Tan
Le Van Tan
LTLouise Thwaites
Louise Thwaites
DCDavid Clifton
David Clifton
The paucity of physiological time-series data collected from low-resource clinical settings limits the capabilities of modern machine learning algorithms in achieving high performance. Such performance is further hindered by class imbalance; datasets where a diagnosis is much more common than others. To overcome these two issues at low-cost while preserving privacy, data augmentation methods can be employed. In the time domain, the traditional method of time-warping could alter the underlying data distribution with detrimental consequences. This is prominent when dealing with physiological conditions that influence the frequency components of data. In this paper, we propose PlethAugment; three different conditional generative adversarial networks (CGANs) with an adapted diversity term for the generation of pathological photoplethysmogram (PPG) signals in order to boost medical classification performance. To evaluate and compare the GANs, we introduce a novel metric-agnostic method; the synthetic generalization curve. We validate this approach on two proprietary and two public datasets representing a diverse set of medical conditions. Compared to training on non-augmented class-balanced datasets, training on augmented datasets leads to an improvement of the AUROC by up to 29% when using cross validation. This illustrates the potential of the proposed CGANs to significantly improve classification performance.

5 February 2020 in The American Journal of Tropical Medicine and Hygiene
Verified
Journal Article
Open access
PDF file
HDHa Thi Hai Duong
Ha Thi Hai Duong
GTGirmaw Abebe Tadesse
Girmaw Abebe Tadesse
PNPhung Tran Huy Nhat
Phung Tran Huy Nhat
NHNguyen Van Hao
Nguyen Van Hao
JPJohn Prince
John Prince
LTLouise Thwaites
Louise Thwaites
Autonomic nervous system dysfunction (ANSD) is a significant cause of mortality in tetanus. Currently, diagnosis relies on nonspecific clinical signs. Heart rate variability (HRV) may indicate underlying autonomic nervous system activity and represents a potentially valuable noninvasive tool for ANSD diagnosis in tetanus. HRV was measured from three 5-minute electrocardiogram recordings during a 24-hour period in a cohort of patients with severe tetanus, all receiving mechanical ventilation. HRV measurements from all subjects—five with ANSD (Ablett Grade 4) and four patients without ANSD (Ablett Grade 3)—showed HRV was lower than reported ranges for healthy individuals. Comparing different severities of tetanus, raw data for both time and frequency measurements of HRV were reduced in those with ANSD compared with those without. Differences were statistically significant in all except root mean square SD, indicating HRV may be a valuable tool in ANSD diagnosis.

18 August 2023 in npj Digital Medicine
Verified
Journal Article
Open access
PDF file
GTGirmaw Abebe Tadesse
Girmaw Abebe Tadesse
CCCelia Cintas
Celia Cintas
KVKush Varshney
Kush Varshney
PSPeter Staar
Peter Staar
CAChinyere Agunwa
Chinyere Agunwa
RDRoxana Daneshjou
Roxana Daneshjou
Images depicting dark skin tones are significantly underrepresented in the educational materials used to teach primary care physicians and dermatologists to recognize skin diseases. This could contribute to disparities in skin disease diagnosis across different racial groups. Previously, domain experts have manually assessed textbooks to estimate the diversity in skin images. Manual assessment does not scale to many educational materials and introduces human errors. To automate this process, we present the Skin Tone Analysis for Representation in EDucational materials (STAR-ED) framework, which assesses skin tone representation in medical education materials using machine learning. Given a document (e.g., a textbook in .pdf), STAR-ED applies content parsing to extract text, images, and table entities in a structured format. Next, it identifies images containing skin, segments the skin-containing portions of those images, and estimates the skin tone using machine learning. STAR-ED was developed using the Fitzpatrick17k dataset. We then externally tested STAR-ED on four commonly used medical textbooks. Results show strong performance in detecting skin images (0.96 ± 0.02 AUROC and 0.90 ± 0.06 F1score) and classifying skin tones (0.87 ± 0.01 AUROC and 0.91 ± 0.00 F1score). STAR-ED quantifies the imbalanced representation of skin tones in four medical textbooks: brown and black skin tones (Fitzpatrick V-VI) images constitute only 10.5% of all skin images. We envision this technology as a tool for medical educators, publishers, and practitioners to assess skin tone diversity in their educational materials.

9 January 2020 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Open access
GTGirmaw Abebe Tadesse
Girmaw Abebe Tadesse
HJHamza Javed
Hamza Javed
NTNhan Le Nguyen Thanh
Nhan Le Nguyen Thanh
HTHai Duong Ha Thai
Hai Duong Ha Thai
LTLe Van Tan
Le Van Tan
TZTingting Zhu
Tingting Zhu
In low and middle income countries, infectious diseases continue to have a significant impact, particularly amongst the poorest in society. Tetanus and hand foot and mouth disease (HFMD) are two such diseases and, in both, death is associated with autonomic nervous system dysfunction (ANSD). Currently, photoplethysmogram or electrocardiogram monitoring is used to detect deterioration in these patients, however expensive clinical monitors are often required. In this study, we employ low-cost and mobile wearable devices to collect patient vital signs unobtrusively; and we develop machine learning algorithms for automatic and rapid triage of patients that provide efficient use of clinical resources. Existing methods are mainly dependent on the prior detection of clinical features with limited exploitation of multi-modal physiological data. Moreover, the latest developments in deep learning (e.g. cross-domain transfer learning) have not been sufficiently applied for infectious disease diagnosis. In this paper, we present a fusion of multi-modal physiological data to predict the severity of ANSD with a hierarchy of resource-aware decision making. First, an on-site triage process is performed using a simple classifier. Second, personalised longitudinal modelling is employed that takes the previous states of the patient into consideration. We have also employed a spectrogram representation of the physiological waveforms to exploit existing networks for cross-domain transfer learning, which avoids the laborious and data intensive process of training a network from scratch. Results show that the proposed framework has promising potential in supporting severity grading of infectious diseases in low-resources settings, such as in the the developing world.

28 April 2023 in PLOS Global Public Health
Verified
Journal Article
Open access
PDF file
AFAndrew W. K. Farlow
Andrew W. K. Farlow
AHAlexander Hoffmann
Alexander Hoffmann
GTGirmaw Abebe Tadesse
Girmaw Abebe Tadesse
DMDeogratias Mzurikwao
Deogratias Mzurikwao
RBRob Beyer
Rob Beyer
MGMatthias Gröschel
Matthias Gröschel
Digital health technologies can help tackle challenges in global public health. Digital and AI-for-Health Challenges, controlled events whose goal is to generate solutions to a given problem in a defined period of time, are one way of catalysing innovation. This article proposes an expanded investment framework for Global Health AI and digitalhealth Innovation that goes beyond traditional factors such as return on investment. Instead, we propose non monetary and non GDP metrics, such as Disability Adjusted Life Years or achievement of universal health coverage. Furthermore, we suggest a venture building approach around global health, which includes filtering of participants to reduce opportunity cost, close integration of implementation scientists and an incubator for the long-term development of ideas resulting from the challenge. Finally, we emphasize the need to strengthen human capital across a range of areas in local innovation, implementation-science, and in health services.