Idoia Biurrun

Idoia Biurrun


Research Focus & Metrics

Academic Career Length

31Years (1996-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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19 November 2018 in Nature Ecology & Evolution
Verified
Journal Article
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HBHelge Bruelheide
Helge Bruelheide
JDJürgen Dengler
Jürgen Dengler
OPOliver Purschke
Oliver Purschke
JLJonathan Lenoir
Jonathan Lenoir
BJBorja Jiménez-Alfaro
Borja Jiménez-Alfaro
UJUte Jandt
Ute Jandt
Plant functional traits directly affect ecosystem functions. At the species level, trait combinations depend on trade-offs representing different ecological strategies, but at the community level trait combinations are expected to be decoupled from these trade-offs because different strategies can facilitate co-existence within communities. A key question is to what extent community-level trait composition is globally filtered and how well it is related to global versus local environmental drivers. Here, we perform a global, plot-level analysis of trait–environment relationships, using a database with more than 1.1 million vegetation plots and 26,632 plant species with trait information. Although we found a strong filtering of 17 functional traits, similar climate and soil conditions support communities differing greatly in mean trait values. The two main community trait axes that capture half of the global trait variation (plant stature and resource acquisitiveness) reflect the trade-offs at the species level but are weakly associated with climate and soil conditions at the global scale. Similarly, within-plot trait variation does not vary systematically with macro-environment. Our results indicate that, at fine spatial grain, macro-environmental drivers are much less important for functional trait composition than has been assumed from floristic analyses restricted to co-occurrence in large grid cells. Instead, trait combinations seem to be predominantly filtered by local-scale factors such as disturbance, fine-scale soil conditions, niche partitioning and biotic interactions.

26 July 2020 in Applied Vegetation Science
Verified
Journal Article
Open access
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MCMilan Chytrý
Milan Chytrý
LTLubomír Tichý
Lubomír Tichý
SHStephan M. Hennekens
Stephan M. Hennekens
IKIlona Knollová
Ilona Knollová
JJJohn A. M. Janssen
John A. M. Janssen
JSJoop H. J. Schaminée
Joop H. J. Schaminée
Aim: The EUNIS Habitat Classification is a widely used reference framework for European habitat types (habitats), but it lacks formal definitions of individual habitats that would enable their unequivocal identification. Our goal was to develop a tool for assigning vegetation‐plot records to the habitats of the EUNIS system, use it to classify a European vegetation‐plot database, and compile statistically‐derived characteristic species combinations and distribution maps for these habitats.Location: Europe.Methods: We developed the classification expert system EUNIS‐ESy, which contains definitions of individual EUNIS habitats based on their species composition and geographic location. Each habitat was formally defined as a formula in a computer language combining algebraic and set‐theoretic concepts with formal logical operators. We applied this expert system to classify 1,261,373 vegetation plots from the European Vegetation Archive (EVA) and other databases. Then we determined diagnostic, constant and dominant species for each habitat by calculating species‐to‐habitat fidelity and constancy (occurrence frequency) in the classified data set. Finally, we mapped the plot locations for each habitat.Results: Formal definitions were developed for 199 habitats at Level 3 of the EUNIS hierarchy, including 25 coastal, 18 wetland, 55 grassland, 43 shrubland, 46 forest and 12 man‐made habitats. The expert system classified 1,125,121 vegetation plots to these habitat groups and 73,188 to other habitats, while 63,064 plots remained unclassified or were classified to more than one habitat. Data on each habitat were summarized in factsheets containing habitat description, distribution map, corresponding syntaxa and characteristic species combination.Conclusions: EUNIS habitats were characterized for the first time in terms of their species composition and distribution, based on a classification of a European database of vegetation plots using the newly developed electronic expert system EUNIS‐ESy. The data provided and the expert system have considerable potential for future use in European nature conservation planning, monitoring and assessment.

20 August 2015 in Applied Vegetation Science
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Journal Article
Open access
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MCMilan Chytrý
Milan Chytrý
SHStephan M. Hennekens
Stephan M. Hennekens
BJBorja Jiménez-Alfaro
Borja Jiménez-Alfaro
IKIlona Knollová
Ilona Knollová
JDJürgen Dengler
Jürgen Dengler
SYSergey Yamalov
Sergey Yamalov
The European Vegetation Archive (EVA) is a centralized database of European vegetation plots developed by the IAVS Working Group European Vegetation Survey. It has been in development since 2012 and first made available for use in research projects in 2014. It stores copies of national and regional vegetation‐ plot databases on a single software platform. Data storage in EVA does not affect on‐going independent development of the contributing databases, which remain the property of the data contributors. EVA uses a prototype of the database management software TURBOVEG 3 developed for joint management of multiple databases that use different species lists. This is facilitated by the SynBioSys Taxon Database, a system of taxon names and concepts used in the individual European databases and their corresponding names on a unified list of European flora. TURBOVEG 3 also includes procedures for handling data requests, selections and provisions according to the approved EVA Data Property and Governance Rules. By 30 June 2015, 61 databases from all European regions have joined EVA, contributing in total 1 027 376 vegetation plots, 82% of them with geographic coordinates, from 57 countries. EVA provides a unique data source for large‐scale analyses of European vegetation diversity both for fundamental research and nature conservation applications. Updated information on EVA is available online at http://euroveg.org/eva-database.

4 February 2019 in Journal of Vegetation Science
Verified
Journal Article
Open access
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HBHelge Bruelheide
Helge Bruelheide
JDJürgen Dengler
Jürgen Dengler
BJBorja Jiménez‐Alfaro
Borja Jiménez‐Alfaro
OPOliver Purschke
Oliver Purschke
SHStephan M. Hennekens
Stephan M. Hennekens
AZAndrei Zverev
Andrei Zverev
Aims: Vegetation‐plot records provide information on the presence and cover or abundance of plants co‐occurring in the same community. Vegetation‐plot data are spread across research groups, environmental agencies and biodiversity research centers and, thus, are rarely accessible at continental or global scales. Here we present the sPlot database, which collates vegetation plots worldwide to allow for the exploration of global patterns in taxonomic, functional and phylogenetic diversity at the plant community level.Results: sPlot version 2.1 contains records from 1,121,244 vegetation plots, which comprise 23,586,216 records of plant species and their relative cover or abundance in plots collected worldwide between 1885 and 2015. We complemented the information for each plot by retrieving climate and soil conditions and the biogeographic context (e.g., biomes) from external sources, and by calculating community‐weighted means and variances of traits using gap‐filled data from the global plant trait database TRY. Moreover, we created a phylogenetic tree for 50,167 out of the 54,519 species identified in the plots. We present the first maps of global patterns of community richness and community‐weighted means of key traits.Conclusions: The availability of vegetation plot data in sPlot offers new avenues for vegetation analysis at the global scale.

11 January 2023 in Journal of Vegetation Science
Verified
Journal Article
Open access
LTLubomír Tichý
Lubomír Tichý
IAIrena Axmanová
Irena Axmanová
JDJürgen Dengler
Jürgen Dengler
RGRiccardo Guarino
Riccardo Guarino
FJFlorian Jansen
Florian Jansen
MCMilan Chytrý
Milan Chytrý
Aims: Ellenberg‐type indicator values are expert‐based rankings of plant species according to their ecological optima on main environmental gradients. Here we extend the indicator‐value system proposed by Heinz Ellenberg and co‐authors for Central Europe by incorporating other systems of Ellenberg‐type indicator values (i.e., those using scales compatible with Ellenberg values) developed for other European regions. Our aim is to create a harmonized data set of Ellenberg‐type indicator values applicable at the European scale.Methods: We collected European data sets of indicator values for vascular plants and selected 13 data sets that used the nine‐, ten‐ or twelve‐degree scales defined by Ellenberg for light, temperature, moisture, reaction, nutrients and salinity. We compared these values with the original Ellenberg values and used those that showed consistent trends in regression slope and coefficient of determination. We calculated the average value for each combination of species and indicator values from these data sets. Based on species’ co‐occurrences in European vegetation plots, we also calculated new values for species that were not assigned an indicator value.Results: We provide a new data set of Ellenberg‐type indicator values for 8908 European vascular plant species (8168 for light, 7400 for temperature, 8030 for moisture, 7282 for reaction, 7193 for nutrients, and 7507 for salinity), of which 398 species have been newly assigned to at least one indicator value.Conclusions: The newly introduced indicator values are compatible with the original Ellenberg values. They can be used for large‐scale studies of the European flora and vegetation or for gap‐filling in regional data sets. The European indicator values and the original and taxonomically harmonized regional data sets of Ellenberg‐type indicator values are available in the Supporting Information and the Zenodo repository.

21 June 2021 in Global Ecology and Biogeography
Verified
Journal Article
Open access
PDF file
FSFrancesco Maria Sabatini
Francesco Maria Sabatini
JLJonathan Lenoir
Jonathan Lenoir
THTarek Hattab
Tarek Hattab
EAElise Aimee Arnst
Elise Aimee Arnst
MCMilan Chytrý
Milan Chytrý
HBHelge Bruelheide
Helge Bruelheide
Motivation: Assessing biodiversity status and trends in plant communities is critical for understanding, quantifying and predicting the effects of global change on ecosystems. Vegetation plots record the occurrence or abundance of all plant species co‐occurring within delimited local areas. This allows species absences to be inferred, information seldom provided by existing global plant datasets. Although many vegetation plots have been recorded, most are not available to the global research community. A recent initiative, called ‘sPlot’, compiled the first global vegetation plot database, and continues to grow and curate it. The sPlot database, however, is extremely unbalanced spatially and environmentally, and is not open‐access. Here, we address both these issues by (a) resampling the vegetation plots using several environmental variables as sampling strata and (b) securing permission from data holders of 105 local‐to‐regional datasets to openly release data. We thus present sPlotOpen, the largest open‐access dataset of vegetation plots ever released. sPlotOpen can be used to explore global diversity at the plant community level, as ground truth data in remote sensing applications, or as a baseline for biodiversity monitoring.Main types of variable contained: Vegetation plots (n = 95,104) recording cover or abundance of naturally co‐occurring vascular plant species within delimited areas. sPlotOpen contains three partially overlapping resampled datasets (c. 50,000 plots each), to be used as replicates in global analyses. Besides geographical location, date, plot size, biome, elevation, slope, aspect, vegetation type, naturalness, coverage of various vegetation layers, and source dataset, plot‐level data also include community‐weighted means and variances of 18 plant functional traits from the TRY Plant Trait Database.Spatial location and grain: Global, 0.01–40,000 m².Time period and grain: 1888–2015, recording dates.Major taxa and level of measurement: 42,677 vascular plant taxa, plot‐level records.Software format: Three main matrices (.csv), relationally linked.