Jan Svoboda

Prof. Jan Svoboda


Research Focus & Metrics

Academic Career Length

27Years (2000-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 November 2004 in Molecular and Cellular Biology
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YGYann-Gaël Gangloff
Yann-Gaël Gangloff
MMMatthias Mueller
Matthias Mueller
SDStephen G. Dann
Stephen G. Dann
PSPetr Svoboda
Petr Svoboda
MSMelanie Sticker
Melanie Sticker
SKSara C. Kozma
Sara C. Kozma
The mammalian target of rapamycin (mTOR) is a key component of a signaling pathway which integrates inputs from nutrients and growth factors to regulate cell growth. Recent studies demonstrated that mice harboring an ethylnitrosourea-induced mutation in the gene encoding mTOR die at embryonic day 12.5 (E12.5). However, others have shown that the treatment of E4.5 blastocysts with rapamycin blocks trophoblast outgrowth, suggesting that the absence of mTOR should lead to embryonic lethality at an earlier stage. To resolve this discrepancy, we set out to disrupt the mTOR gene and analyze the outcome in both heterozygous and homozygous settings. Heterozygous mTOR (mTOR+/−) mice do not display any overt phenotype, although mouse embryonic fibroblasts derived from these mice show a 50% reduction in mTOR protein levels and phosphorylation of S6 kinase 1 T389, a site whose phosphorylation is directly mediated by mTOR. However, S6 phosphorylation, raptor levels, cell size, and cell cycle transit times are not diminished in these cells. In contrast to the situation in mTOR+/− mice, embryonic development of homozygous mTOR−/− mice appears to be arrested at E5.5; such embryos are severely runted and display an aberrant developmental phenotype. The ability of these embryos to implant corresponds to a limited level of trophoblast outgrowth in vitro, reflecting a maternal mRNA contribution, which has been shown to persist during preimplantation development. Moreover, mTOR−/− embryos display a lesion in inner cell mass proliferation, consistent with the inability to establish embryonic stem cells from mTOR−/− embryos.

2 March 2008 in Nature Structural & Molecular Biology
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Journal Article
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LSLasse Sinkkonen
Lasse Sinkkonen
THTabea Hugenschmidt
Tabea Hugenschmidt
PBPhilipp Berninger
Philipp Berninger
DGDimos Gaidatzis
Dimos Gaidatzis
FMFabio Mohn
Fabio Mohn
WFWitold Filipowicz
Witold Filipowicz

1 November 2013 in Cell
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Journal Article
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MFMatyas Flemr
Matyas Flemr
RMRadek Malik
Radek Malik
VFVedran Franke
Vedran Franke
JNJana Nejepinska
Jana Nejepinska
RSRadislav Sedlacek
Radislav Sedlacek
PSPetr Svoboda
Petr Svoboda

1 July 2006 in Genes & Development
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SBScott J. Bultman
Scott J. Bultman
TGThomas C. Gebuhr
Thomas C. Gebuhr
HPHua Pan
Hua Pan
PSPetr Svoboda
Petr Svoboda
RSRichard M. Schultz
Richard M. Schultz
TMTerry Magnuson
Terry Magnuson
Zygotic genome activation (ZGA) is a nuclear reprogramming event that transforms the genome from transcriptional quiescence at fertilization to robust transcriptional activity shortly thereafter. The ensuing gene expression profile in the cleavage-stage embryo establishes totipotency and is required for further development. Although little is known about the molecular basis of ZGA, oocyte-derived mRNAs and proteins that alter chromatin structure are likely crucial. To test this hypothesis, we generated a maternal-effect mutation of Brg1, which encodes a catalytic subunit of SWI/SNF-related complexes, utilizing Cre-loxP gene targeting. In conditional-mutant females, BRG1-depleted oocytes completed meiosis and were fertilized. However, embryos conceived from BRG1-depleted eggs exhibited a ZGA phenotype including two-cell arrest and reduced transcription for ∼30% of expressed genes. Genes involved in transcription, RNA processing, and cell cycle regulation were particularly affected. The early embryonic arrest is not a consequence of a defective oocyte because depleting maternal BRG1 after oocyte development is complete by RNA interference (RNAi) also resulted in two-cell arrest. To our knowledge, Brg1 is the first gene required for ZGA in mammals. Depletion of maternal BRG1 did not affect global levels of histone acetylation, whereas dimethyl-H3K4 levels were reduced. These data provide a framework for understanding the mechanism of ZGA.

9 January 2004 in Science
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AFAndrew M. Fedoriw
Andrew M. Fedoriw
PSPaula Stein
Paula Stein
PSPetr Svoboda
Petr Svoboda
RSRichard M. Schultz
Richard M. Schultz
MBMarisa S. Bartolomei
Marisa S. Bartolomei
The imprinted regulation of H19 and Insulin-like growth factor 2 expression involves binding of the vertebrate insulator protein, CCCTC binding factor (CTCF), to the maternally hypomethylated differentially methylated domain (DMD). Howthis hypomethylated state is maintained during oogenesis and the role of CTCF, if any, in this process are not understood. With the use of a transgenic RNA interference (RNAi)–based approach to generate oocytes with reduced amounts of CTCF protein, we found increased methylation of the H19 DMD and decreased developmental competence of CTCF-deficient oocytes. Our results suggest that CTCF protects the H19 DMD from de novo methylation during oocyte growth and is required for normal preimplantation development.

29 March 2006 in Cellular and Molecular Life Sciences
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PSPetr Svoboda
Petr Svoboda
ACA. Di. Cara
A. Di. Cara