Jeremy Koelmel

Dr. Jeremy Koelmel

orcid

Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 March 2020 in Metabolites
Verified
Journal Article
Open access
PDF file
JKJeremy Koelmel
Jeremy Koelmel
XLXiangdong Li
Xiangdong Li
SSSarah Stow
Sarah Stow
MSMark Sartain
Mark Sartain
AMAdithya Murali
Adithya Murali
NKNorton Kitagawa
Norton Kitagawa
Lipidomics has great promise in various applications; however, a major bottleneck in lipidomics is the accurate and comprehensive annotation of high-resolution tandem mass spectral data. While the number of available lipidomics software has drastically increased over the past five years, the reduction of false positives and the realization of obtaining structurally accurate annotations remains a significant challenge. We introduce Lipid Annotator, which is a user-friendly software for lipidomic analysis of data collected by liquid chromatography high-resolution tandem mass spectrometry (LC-HRMS/MS). We validate annotation accuracy against lipid standards and other lipidomics software. Lipid Annotator was integrated into a workflow applying an iterative exclusion MS/MS acquisition strategy to National Institute of Standards and Technology (NIST) SRM 1950 Metabolites in Frozen Human Plasma using reverse phase LC-HRMS/MS. Lipid Annotator, LipidMatch, and MS-DIAL produced consensus annotations at the level of lipid class for 98% and 96% of features detected in positive and negative mode, respectively. Lipid Annotator provides percentages of fatty acyl constituent species and employs scoring algorithms based on probability theory, which is less subjective than the tolerance and weighted match scores commonly used by available software. Lipid Annotator enables analysis of large sample cohorts and improves data-processing throughput as compared to previous lipidomics software.

23 January 2025 in Environmental Science & Technology Letters
Verified
Journal Article
Closed access
SNSeth R. Newton
Seth R. Newton
JBJohn A. Bowden
John A. Bowden
NCNathaniel Charest
Nathaniel Charest
SJStephen R. Jackson
Stephen R. Jackson
JKJeremy Koelmel
Jeremy Koelmel
Antony J. WilliamsAntony J. Williams
Antony J. Williams

23 November 2020 in Journal of the American Society for Mass Spectrometry
Verified
Journal Article
Closed access
SNSara L. Nason
Sara L. Nason
JKJeremy Koelmel
Jeremy Koelmel
Nubia Zuverza-MenaNubia Zuverza-Mena
Nubia Zuverza-Mena
CSChelli Stanley
Chelli Stanley
CTCarlos Tamez
Carlos Tamez
Krystal PollittKrystal Pollitt
Krystal Pollitt

24 February 2021 in Environmental Science & Technology
Verified
Journal Article
Closed access
JKJeremy Koelmel
Jeremy Koelmel
ELElizabeth Z. Lin
Elizabeth Z. Lin
ANAmy Nichols
Amy Nichols
PGPengfei Guo
Pengfei Guo
YZYakun Zhou
Yakun Zhou
Krystal PollittKrystal Pollitt
Krystal Pollitt

1 November 2021 in Environment International
Verified
Journal Article
Open access
PGPengfei Guo
Pengfei Guo
ELElizabeth Z. Lin
Elizabeth Z. Lin
JKJeremy Koelmel
Jeremy Koelmel
EDEnmin Ding
Enmin Ding
YGYing Gao
Ying Gao
Krystal PollittKrystal Pollitt
Krystal Pollitt
The health impact of airborne contaminants has been challenging to assess due to current limitations in measurement technologies. The emergence of wearable passive samplers coupled with high resolution mass spectrometry (HR-MS) chemical analysis has enabled comprehensive characterization of personal exposures. We conducted a repeated-measure study among 84 older adults in Jinan, China, as part of the Biomarkers for Air Pollutants Exposure (China BAPE) study. Study objectives were: 1) to characterize the occurrence, magnitude, and distribution of personal exposure to airborne contaminants; 2) to evaluate the temporal variation of chemical exposures across the study population; and 3) to identify behavioral and environmental factors that influence the observed variance in chemical exposures. The FreshAir wristband was worn by participants for three consecutive days each month from September 2018 to January 2019 and collected with paired time-activity logs. Passive air samplers were also deployed in parallel at a local outdoor air monitoring station. Spearman's Rho trend test and trajectory cluster analysis were used to identify exposure trends and variation patterns, respectively. Out of the 70 airborne compounds of potential concern screened, 26 compounds from 10 chemical classes were found to be above detection thresholds across >70% of the study population. Personal exposures were predominantly characterized by nine polycyclic aromatic hydrocarbons (PAHs), four phthalates, three nitroaromatics, and two volatile organic compounds (VOCs). Phthalate personal exposures were positively correlated with outdoor temperatures while the inverse relationship was observed for certain PAHs (p < 0.05). Specifically, dimethyl phthalate (rs = 0.31) decreased as temperatures declined, while nitrobenzene (rs = -0.35) and naphthalene (rs = -0.40) increased as temperatures decreased. Compared to levels measured at the outdoor air monitoring site, personal exposure of phthalates was elevated (p < 0.05) and hexachlorobutadiene was lower across participants (p < 0.01). Personal exposure of these chemicals was further found to be weakly associated with daily duration participants spent outdoors. Individuals formed distinct clusters based on trajectories of chemical exposures across the sampling period (September to January), potentially suggestive of distinct emission sources. In conclusion, we demonstrate the feasibility of characterizing the occurrence and magnitude of personal exposure to airborne chemical contaminants using passive wristband samplers. The temporal variability of these personal exposure profiles was highlighted and with distinct trends identified across different groups of individuals. Future studies will integrate this data with other omics datasets collected from this population of Chinese older adults to investigate associations between exposure profiles and health relevant biomarkers, to provide evidence in feasibility of disease prevention through environmental improvements.

28 January 2022 in Environmental Science & Technology
Verified
Journal Article
Closed access
JKJeremy Koelmel
Jeremy Koelmel
ELElizabeth Z. Lin
Elizabeth Z. Lin
KDKayley DeLay
Kayley DeLay
AWAntony J. Williams
Antony J. Williams
YZYakun Zhou
Yakun Zhou
Krystal PollittKrystal Pollitt
Krystal Pollitt