The importance of niche vs. neutral assembly mechanisms in structuring tropical tree communities remains an important unsettled question in community ecology [Bell G (2005) Ecology 86:1757–1770]. There is ample evidence that species distributions are determined by soils and habitat factors at landscape (<10 ⁴ km ² ) and regional scales. At local scales (0.5 million individual trees of 1,400 species and 10 essential plant nutrients, we used Monte Carlo simulations of species distributions to test plant–soil associations against null expectations based on dispersal assembly. We found that the spatial distributions of 36–51% of tree species at these sites show strong associations to soil nutrient distributions. Neutral dispersal assembly cannot account for these plant–soil associations or the observed niche breadths of these species. These results indicate that belowground resource availability plays an important role in the assembly of tropical tree communities at local scales and provide the basis for future investigations on the mechanisms of resource competition among tropical tree species.

Both habitat filtering and dispersal limitation influence the compositional structure of forest communities, but previous studies examining the relative contributions of these processes with variation partitioning have primarily used topography to represent the influence of the environment. Here, we bring together data on both topography and soil resource variation within eight large (24–50 ha) tropical forest plots, and use variation partitioning to decompose community compositional variation into fractions explained by spatial, soil resource and topographic variables. Both soil resources and topography account for significant and approximately equal variation in tree community composition (9–34% and 5–29%, respectively), and all environmental variables together explain 13–39% of compositional variation within a plot. A large fraction of variation (19–37%) was spatially structured, yet unexplained by the environment, suggesting an important role for dispersal processes and unmeasured environmental variables. For the majority of sites, adding soil resource variables to topography nearly doubled the inferred role of habitat filtering, accounting for variation in compositional structure that would previously have been attributable to dispersal. Our results, illustrated using a new graphical depiction of community structure within these plots, demonstrate the importance of small-scale environmental variation in shaping local community structure in diverse tropical forests around the globe.

Tropical tree communities are shaped by local-scale habitat heterogeneity in the form of topographic and edaphic variation, but the life-history stage at which habitat associations develop remains poorly understood. This is due, in part, to the fact that previous studies have not accounted for the widely disparate sample sizes (number of stems) that result when trees are divided into size classes. We demonstrate that the observed habitat structuring of a community is directly related to the number of individuals in the community. We then compare the relative importance of habitat heterogeneity to tree community structure for saplings, juveniles and adult trees within seven large (24–50 ha) tropical forest dynamics plots while controlling for sample size. Changes in habitat structuring through tree life stages were small and inconsistent among life stages and study sites. Where found, these differences were an order of magnitude smaller than the findings of previous studies that did not control for sample size. Moreover, community structure and composition were very similar among tree sub-communities of different life stages. We conclude that the structure of these tropical tree communities is established by the time trees are large enough to be included in the census (1 cm diameter at breast height), which indicates that habitat filtering occurs during earlier life stages.

Globally, a majority of people use plants as a primary source of healthcare and introduced plants are increasingly discussed as medicine. Protecting this resource for human health depends upon understanding which plants are used and how use patterns will change over time. The increasing use of introduced plants in local pharmacopoeia has been explained by their greater abundance or accessibility (availability hypothesis), their ability to cure medical conditions that are not treated by native plants (diversification hypothesis), or as a result of the introduced plants’ having many different simultaneous roles (versatility hypothesis). In order to describe the role of introduced plants in Ecuador, and to test these three hypotheses, we asked if introduced plants are over-represented in the Ecuadorian pharmacopoeia, and if their use as medicine is best explained by the introduced plants’ greater availability, different therapeutic applications, or greater number of use categories. Drawing on 44,585 plant-use entries, and the checklist of >17,000 species found in Ecuador, we used multi-model inference to test if more introduced plants are used as medicines in Ecuador than expected by chance, and examine the support for each of the three hypotheses above. We find nuanced support for all hypotheses. More introduced plants are utilized than would be expected by chance, which can be explained by geographic distribution, their strong association with cultivation, diversification (except with regard to introduced diseases), and therapeutic versatility, but not versatility of use categories. Introduced plants make a disproportionately high contribution to plant medicine in Ecuador. The strong association of cultivation with introduced medicinal plant use highlights the importance of the maintenance of human-mediated environments such as homegardens and agroforests for the provisioning of healthcare services.

Above-ground biomass (AGB) is increasing in most of the Amazon forests. One hypothesis is that forests are responding to widespread and intense human intervention prior to the European conquest (>500 y ago). In this study we confront this hypothesis with changes in AGB over 6.3 y in a large western Amazonian forest plot (>150 000 shrubs and trees and 1100 species with dbh ≥ 10 mm in 25 ha). We examined AGB flux in different habitats and across diameter classes. The forest lost small stems (4.6%), gained large trees (2.6%), and gained biomass (0.7%). The change in AGB stock was due entirely to this upward shift in size leading to more canopy trees and fewer saplings after just 6 y. Across habitats, the biggest increment in biomass was in the secondary-forest patch (3.4% y⁻¹) which we know was cleared about 27 y ago, whereas mature forest on ridges and valleys had small increases (0.10% and 0.09% y⁻¹, respectively). In both censuses, AGB stocks were >50% higher on the ridge than in the valley while relative growth and mortality were higher in the valley. Mean wood specific gravity (WSG) decreased with increasing diameter class; WSG did not change much between censuses in mature forests and did not contribute to the change in AGB stocks. Our forest increased its standing biomass, but far less than the average reported for other Amazonian forests (i.e. 0.30 vs. 0.98 Mg ha⁻¹ y⁻¹). We find no evidence to support the notion that this forest is recovering from long-past human intervention. Instead of a long-term recovery, we believe the forest changed in response to natural fluctuations of the environment (e.g. changes in precipitation, higher CO₂), windstorms or other more recent events. The significant differences in AGB stocks between valley and ridge suggest that the terra firme forests are a mosaic of natural habitats, and that this mosaic is in part responsible for the variation in biomass stocks detected in Amazonian terra firme forests.Resumen: La biomasa aérea de la mayoría de los bosques amazónicos está incrementando. Una hipótesis es que los bosques están respondiendo a un disturbio humano intenso y ampliamente distribuido, anterior a la llegada de los conquistadores europeos (>500 años atrás). En este estudio se confronta esta hipótesis con los cambios en biomasa encontrados en 6.3 años en una parcela de gran escala de la Amazonia occidental (>150.000 arbustos y árboles con diámetro a la altura del pecho ≥10 mm y 1100 especies en 25 ha). Los resultados se examinan por categorías de diámetro y hábitat. En este período el bosque perdió tallos pequeños (4.6%), ganó árboles grandes (2.6%) y ganó biomasa (0.7%). La ganancia en biomasa fue debida enteramente al incremento de árboles de gran tamaño que significó más árboles de dosel y menos juveniles en apenas 6 años. Entre los hábitats, el mayor incremento en biomasa se encontró en un parche de bosque secundario de colina (3.4%/año), cuya edad es de 27 años, mientras el bosque maduro de las colinas y los valles incrementó escasamente (0.10% y 0.09%/año, respectivamente). Tanto al inicio como al final del estudio, el stock de biomasa fue >50% más grande en la colina que en el valle mientras que el crecimiento y la mortalidad relativa fueron mayores en el valle. La media de la gravedad específica de la madera (GEM) fue menor a mayor clase diamétrica; en el bosque maduro, el cambio en la GEM fue insignificante y no contribuyó al aumento en stocks de biomasa. El bosque incrementó la biomasa aérea pero mucho menos que el promedio reportado para otros bosques amazónicos (i.e. 0.30 vs. 0.98 Mg ha⁻¹/año). No se encontró evidencia que apoye la noción de que el bosque se está recuperando de un disturbio de gran escala ocurrido en el pasado. En su lugar, se cree que el bosque cambió en respuesta a fluctuaciones naturales del ambiente (e.g. cambios en precipitación, mayor concentración de CO₂), vendavales u otro tipo de eventos más recientes. La diferencia significativa en los stocks de biomasa encontrada entre el valle y la colina sugiere que la tierra firme es un mosaico de hábitats naturales y que este mosaico podría explicar en parte la variación encontrada en los stocks de biomasa de bosques amazónicos de tierra firme.