Patrick Blackburn

Dr. Patrick Blackburn

orcid

Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 September 2018 in eLife
Verified
Journal Article
Open access
MIMyron Ignatius
Myron Ignatius
MHMadeline N Hayes
Madeline N Hayes
FMFinola E Moore
Finola E Moore
QTQin Tang
Qin Tang
SGSara P Garcia
Sara P Garcia
DLDavid M Langenau
David M Langenau
The TP53 tumor-suppressor gene is mutated in >50% of human tumors and Li-Fraumeni patients with germ line inactivation are predisposed to developing cancer. Here, we generated tp53 deleted zebrafish that spontaneously develop malignant peripheral nerve-sheath tumors, angiosarcomas, germ cell tumors, and an aggressive Natural Killer cell-like leukemia for which no animal model has been developed. Because the tp53 deletion was generated in syngeneic zebrafish, engraftment of fluorescent-labeled tumors could be dynamically visualized over time. Importantly, engrafted tumors shared gene expression signatures with predicted cells of origin in human tissue. Finally, we showed that tp53del/del enhanced invasion and metastasis in kRASG12D-induced embryonal rhabdomyosarcoma (ERMS), but did not alter the overall frequency of cancer stem cells, suggesting novel pro-metastatic roles for TP53 loss-of-function in human muscle tumors. In summary, we have developed a Li-Fraumeni zebrafish model that is amenable to large-scale transplantation and direct visualization of tumor growth in live animals.

26 June 2019 in Genetics in Medicine
Verified
Journal Article
Open access
PDF file
EKEnrico D. H. Konrad
Enrico D. H. Konrad
NNNiels Nardini
Niels Nardini
ACAlmuth Caliebe
Almuth Caliebe
INInga Nagel
Inga Nagel
DYDana Young
Dana Young
CZChristiane Zweier
Christiane Zweier
Purpose Pathogenic variants in the chromatin organizer CTCF were previously reported in seven individuals with a neurodevelopmental disorder (NDD). Methods Through international collaboration we collected data from 39 subjects with variants in CTCF. We performed transcriptome analysis on RNA from blood samples and utilized Drosophila melanogaster to investigate the impact of Ctcf dosage alteration on nervous system development and function. Results The individuals in our cohort carried 2 deletions, 8 likely gene-disruptive, 2 splice-site, and 20 different missense variants, most of them de novo. Two cases were familial. The associated phenotype was of variable severity extending from mild developmental delay or normal IQ to severe intellectual disability. Feeding difficulties and behavioral abnormalities were common, and variable other findings including growth restriction and cardiac defects were observed. RNA-sequencing in five individuals identified 3828 deregulated genes enriched for known NDD genes and biological processes such as transcriptional regulation. Ctcf dosage alteration in Drosophila resulted in impaired gross neurological functioning and learning and memory deficits. Conclusion We significantly broaden the mutational and clinical spectrum ofCTCF-associated NDDs. Our data shed light onto the functional role of CTCF by identifying deregulated genes and show that Ctcf alterations result in nervous system defects in Drosophila.

7 February 2019 in American Journal of Medical Genetics Part A
Verified
Journal Article
Closed access
PDF file
PNPantelis Nicola
Pantelis Nicola
PBPatrick Blackburn
Patrick Blackburn
KRKristen J. Rasmussen
Kristen J. Rasmussen
NBNicole L. Bertsch
Nicole L. Bertsch
EKEric W. Klee
Eric W. Klee
JCJill Clayton‐Smith
Jill Clayton‐Smith

1 June 2020 in European Journal of Human Genetics
Verified
Journal Article
Closed access
PDF file
TDTheodore G. Drivas
Theodore G. Drivas
DLDong Li
Dong Li
DNDivya Nair
Divya Nair
JAJoseph T. Alaimo
Joseph T. Alaimo
MAMariëlle Alders
Mariëlle Alders
EBElizabeth Bhoj
Elizabeth Bhoj

3 October 2019 in Genetics in Medicine
Verified
Journal Article
Closed access
AZAsh Zawerton
Ash Zawerton
CMCyril Mignot
Cyril Mignot
ASAshley Sigafoos
Ashley Sigafoos
PBPatrick Blackburn
Patrick Blackburn
AHAbdul Haseeb
Abdul Haseeb
CDChristel Depienne
Christel Depienne

3 September 2019 in Laboratory Investigation
Verified
Journal Article
Closed access
PDF file
PBPatrick Blackburn
Patrick Blackburn
DMDragana Milosevic
Dragana Milosevic
TMTomas Marek
Tomas Marek
AFAndrew L. Folpe
Andrew L. Folpe
BHB. Matthew Howe
B. Matthew Howe
JCJodi Carter
Jodi Carter