This paper is a synthetic overview of some of the threats, risks, and integrated water management elements in freshwater ecosystems. The paper provides some discussion of human needs and water conservation issues related to freshwater systems: (1) introduction and background; (2) water basics and natural cycles; (3) freshwater roles in human cultures and civilizations; (4) water as a biosphere cornerstone; (5) climate as a hydrospheric ‘game changer’ from the perspective of freshwater; (6) human-induced stressors’ effects on freshwater ecosystem changes (pollution, habitat fragmentation, etc.); (7) freshwater ecosystems’ biological resources in the context of unsustainable exploitation/overexploitation; (8) invasive species, parasites, and diseases in freshwater systems; (9) freshwater ecosystems’ vegetation; (10) the relationship between human warfare and water. All of these issues and more create an extremely complex matrix of stressors that plays a driving role in changing freshwater ecosystems both qualitatively and quantitatively, as well as their capacity to offer sustainable products and services to human societies. Only internationally integrated policies, strategies, assessment, monitoring, management, protection, and conservation initiatives can diminish and hopefully stop the long-term deterioration of Earth’s freshwater resources and their associated secondary resources.

In spite of the obvious climate changes effects on the Carpathian Basin hydrographic nets fish fauna, studies on their potential refuge habitats in drought periods are scarce. Multiannual (2016–2021) research of fish in some streams located in the Saxon Villages area during hydrological drought periods identified, mapped, and revealed the refuge aquatic habitats presence, management needs, and importance for fish diversity and abundance for small rivers. The impact of increasing global temperature and other human activities induced hydrologic net and habitats alteration, decreased the refuge habitats needed by freshwater fish, diminished the fish abundance, and influenced the spatial and temporal variation in fish assemblage structure in the studied area. The sites more than one meter in depth in the studied lotic system were inventoried and all 500 m of these lotic systems were also checked to see what species and how many individuals were present, and if there is was difference in their abundance between refuge and non-refuge 500 m sectors. The scarce number of these refuges due to relatively high soil erosion and clogging in those basins and the cumulative effects of other human types of impact induced a high degree of pressure on the fish fauna. Overall, it reduced the role of these lotic systems as a refuge and for reproduction for the fish of downstream Târnava Mare River, into which all of them flow. Management elements were proposed to maintain and improve these refuges’ ecological support capacity.

Non-ferrous metals mining activities have long accompanied people, and began in the study area of South East Europe over 2000 years ago. The environment quality is significantly affected by both historic mining activities and contemporary impacts. All these problems, inducing synergic negative effects on local organism communities, have created a chronic state of pollution. The Corna Valley has one of the oldest historical human impacts in Romania due to the influence of mining. Fish and benthic macroinvertebrates have exhibited significant responses to long term mining effects on lotic systems. The analysis of macroinvertebrate communities, correlated with the lack of fish and some biotope characteristics, indicates that the Corna River presents a variety of categories of ecological status between sectors. The lack of fish reveals the poor ecological conditions. Technical and management solutions are proposed here to diminish the historical environmental problems and to avoid future ecological accidents, especially in an attempt to improve any construction plan concerning a possible new de-cyanidation dam and lake. Fish and benthic macroinvertebrates have exhibited significant responses to long term mining effects on lotic systems. Two management zones were identified, an upper zone which can be used as a reference area and a lower zone, where pollution remedial activities are proposed.

Throughout their history humans “tamed” not only the Danube River basin land, but also the river and its associated wetlands, drastically influencing their characteristic habitats, associations, communities, and species. One of these flagship endemic fish species in this respect is the European mudminnow (Umbra krameri Walbaum, 1792), influenced by Danube Basin geography, history, politics, and ecology. A study about this European community concern species in the context of long term human impact on its specific habitats, with potential synergic negative effects of climate change, was treated as highly needed, in an international researchers group initiative to support the efforts to provide hope for preserving this fish species and its ecosystems, and brought it back from the brink of extinction. All the characteristic inventoried wetlands which were or some of them still are natural, semi-natural, or accidental anthropogenic habitats, reveal an accentuated diminishing trend of this species areal continuity; fragmentation being the force which skewed it drastically untill now, and inducing diminishing the specific habitats quantitative and qualitative characteristics in the Danube Basin where these fish fight for survival. The main categories of human activities which impacted the climate changes in the context of this species’ habitats are: water regulation, pollution, dredging, draining, and introduction of non-native species. Overall, the diverse human impact in a climate changes in the context of this species’ habitats, Umbra krameri wetlands, creates serious perspectives on negatively influencing this at a very high scale and level. All the inventoried wetlands where Umbra krameri still survive can be considered an ecologically managed as a refuge and stepping stone wetlands, especially in the increasing climate change trend situation. Supplementary inventory studies in the field should be done for the identification of some may be unknown Umbra krameri habitats and populations.