Hamada Aboubakr

Dr. Hamada Aboubakr

Bioproducts and Biosystems Engineering, University of Minnesota Twin Cities, Minneapolis, MN, USA
orcid

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
30 June 2020 in Transboundary and Emerging Diseases
Verified
Journal Article
Open access
PDF file
Hamada AboubakrHamada Aboubakr
Hamada Aboubakr
TSTamer Sharafeldin
Tamer Sharafeldin
SGSagar Goyal
Sagar Goyal
Although the unprecedented efforts the world has been taking to control the spread of the human coronavirus disease (COVID‐19) and its causative etiology [Severe Acute Respiratory Syndrome‐Coronavirus‐2 (SARS‐CoV‐2)], the number of confirmed cases has been increasing drastically. Therefore, there is an urgent need for devising more efficient preventive measures, to limit the spread of the infection until an effective treatment or vaccine is available. The preventive measures depend mainly on the understanding of the transmission routes of this virus, its environmental stability, and its persistence on common touch surfaces. Due to the very limited knowledge about SARS‐CoV‐2, we can speculate its stability in the light of previous studies conducted on other human and animal coronaviruses. In this review, we present the available data on the stability of coronaviruses (CoVs), including SARS‐CoV‐2, from previous reports to help understand its environmental survival. According to available data, possible airborne transmission of SARS‐CoV‐2 has been suggested. SARS‐CoV‐2 and other human and animal CoVs have remarkably short persistence on copper, latex, and surfaces with low porosity as compared to other surfaces like stainless steel, plastics, glass, and highly porous fabrics. It has also been reported that SARS‐CoV‐2 is associated with diarrhea and that it is shed in the feces of COVID‐19 patients. Some CoVs show persistence in human excrement, sewage, and waters for a few days. These findings suggest a possible risk of fecal‐oral, foodborne, and waterborne transmission of SARS‐CoV‐2 in developing countries that often use sewage‐polluted waters in irrigation and have poor water treatment systems. CoVs survive longer in the environment at lower temperatures and lower relative humidity. It has been suggested that large numbers of COVID‐19 cases are associated with cold and dry climates in temperate regions of the world and that seasonality of the virus spread is suspected.

1 June 2015 in Biointerphases
Verified
Journal Article
Open access
KWKristian Wende
Kristian Wende
PWPaul Williams
Paul Williams
JDJoe Dalluge
Joe Dalluge
WGWouter Van Gaens
Wouter Van Gaens
Hamada AboubakrHamada Aboubakr
Hamada Aboubakr
PBPeter Bruggeman
Peter Bruggeman
The mechanism of interaction of cold nonequilibrium plasma jets with mammalian cells in physiologic liquid is reported. The major biological active species produced by an argon RF plasma jet responsible for cell viability reduction are analyzed by experimental results obtained through physical, biological, and chemical diagnostics. This is complemented with chemical kinetics modeling of the plasma source to assess the dominant reactive gas phase species. Different plasma chemistries are obtained by changing the feed gas composition of the cold argon based RF plasma jet from argon, humidified argon (0.27%), to argon/oxygen (1%) and argon/air (1%) at constant power. A minimal consensus physiologic liquid was used, providing isotonic and isohydric conditions and nutrients but is devoid of scavengers or serum constituents. While argon and humidified argon plasma led to the creation of hydrogen peroxide dominated action on the mammalian cells, argon-oxygen and argon-air plasma created a very different biological action and was characterized by trace amounts of hydrogen peroxide only. In particular, for the argon-oxygen (1%), the authors observed a strong negative effect on mammalian cell proliferation and metabolism. This effect was distance dependent and showed a half life time of 30 min in a scavenger free physiologic buffer. Neither catalase and mannitol nor superoxide dismutase could rescue the cell proliferation rate. The strong distance dependency of the effect as well as the low water solubility rules out a major role for ozone and singlet oxygen but suggests a dominant role of atomic oxygen. Experimental results suggest that O reacts with chloride, yielding Cl2(-) or ClO(-). These chlorine species have a limited lifetime under physiologic conditions and therefore show a strong time dependent biological activity. The outcomes are compared with an argon MHz plasma jet (kinpen) to assess the differences between these (at least seemingly) similar plasma sources.

15 April 2016 in Journal of Physics D: Applied Physics
Verified
Journal Article
Open access
PDF file
Hamada AboubakrHamada Aboubakr
Hamada Aboubakr
UGUrvashi Gangal
Urvashi Gangal
MYMohammed M Youssef
Mohammed M Youssef
SGSagar M Goyal
Sagar M Goyal
PBPeter Bruggeman
Peter Bruggeman
Cold atmospheric pressure plasma (CAP) inactivates bacteria and virus through in situ production of reactive oxygen and nitrogen species (RONS). While the bactericidal and virucidal efficiency of plasmas is well established, there is limited knowledge about the chemistry leading to the pathogen inactivation. This article describes a chemical analysis of the CAP reactive chemistry involved in the inactivation of feline calicivirus. We used a remote radio frequency CAP produced in varying gas mixtures leading to different plasma-induced chemistries. A study of the effects of selected scavengers complemented with positive control measurements of relevant RONS reveal two distinctive pathways based on singlet oxygen and peroxynitrous acid. The first mechanism is favored in the presence of oxygen and the second in the presence of air when a significant pH reduction is induced in the solution by the plasma. Additionally, smaller effects of the H 2 O 2 , O 3 and NO 2 − produced were also found. Identification of singlet oxygen-mediated 2-imidazolone/2-oxo-His (His +14 Da)—an oxidative modification of His 262 comprising the capsid protein of feline calicivirus links the plasma induced singlet oxygen chemistry to viral inactivation.

1 June 2015 in Applied and Environmental Microbiology
Verified
Journal Article
Open access
PDF file
Hamada AboubakrHamada Aboubakr
Hamada Aboubakr
PWPaul Williams
Paul Williams
UGUrvashi Gangal
Urvashi Gangal
MYMohammed M Youssef
Mohammed M Youssef
Sobhy Ahmed El-SohaimySobhy Ahmed El-Sohaimy
Sobhy Ahmed El-Sohaimy
SGSagar Goyal
Sagar Goyal
Minimal food-processing methods are not effective against foodborne viruses, such as human norovirus (NV). It is important, therefore, to explore novel nonthermal technologies for decontamination of foods eaten fresh, minimally processed and ready-to-eat foods, and food contact surfaces. We studied the in vitro virucidal activity of cold atmospheric gaseous plasma (CGP) against feline calicivirus (FCV), a surrogate of NV. Factors affecting the virucidal activity of CGP (a so-called radio frequency atmospheric pressure plasma jet) were the plasma generation power, the exposure time and distance, the plasma feed gas mixture, and the virus suspension medium. Exposure to 2.5-W argon (Ar) plasma caused a 5.55 log 10 unit reduction in the FCV titer within 120 s. The reduction in the virus titer increased with increasing exposure time and decreasing exposure distance. Of the four plasma gas mixtures studied (Ar, Ar plus 1% O 2 , Ar plus 1% dry air, and Ar plus 0.27% water), Ar plus 1% O 2 plasma treatment had the highest virucidal effect: more than 6.0 log 10 units of the virus after 15 s of exposure. The lowest virus reduction was observed with Ar plus 0.27% water plasma treatment (5 log 10 unit reduction after 120 s). The highest reduction in titer was observed when the virus was suspended in distilled water. Changes in temperature and pH and formation of H 2 O 2 were not responsible for the virucidal effect of plasma. The oxidation of viral capsid proteins by plasma-produced reactive oxygen and nitrogen species in the solution was thought to be responsible for the virucidal effect. In conclusion, CGP exhibits virucidal activity in vitro and has the potential to combat viral contamination in foods and on food preparation surfaces.

1 June 2016 in Journal of Food Protection
Verified
Journal Article
Closed access
Hamada AboubakrHamada Aboubakr
Hamada Aboubakr
ANAndrew Nauertz
Andrew Nauertz
NLNhungoc T. Luong
Nhungoc T. Luong
SAShivani Agrawal
Shivani Agrawal
Sobhy Ahmed El-SohaimySobhy Ahmed El-Sohaimy
Sobhy Ahmed El-Sohaimy
SGSagar Goyal
Sagar Goyal
Foodborne viruses, particularly human norovirus, are a concern for public health, especially in fresh vegetables and other minimally processed foods that may not undergo sufficient decontamination. It is necessary to explore novel nonthermal techniques for preventing foodborne viral contamination. In this study, aqueous extracts of six raw food materials (flower buds of clove, fenugreek seeds, garlic and onion bulbs, ginger rhizomes, and jalapeño peppers) were tested for antiviral activity against feline calicivirus (FCV) as a surrogate for human norovirus. The antiviral assay was performed using dilutions of the extracts below the maximum nontoxic concentrations of the extracts to the host cells of FCV, Crandell-Reese feline kidney (CRFK) cells. No antiviral effect was seen when the host cells were pretreated with any of the extracts. However, pretreatment of FCV with nondiluted clove and ginger extracts inactivated 6.0 and 2.7 log of the initial titer of the virus, respectively. Also, significant dosedependent inactivation of FCV was seen when host cells were treated with clove and ginger extracts at the time of infection or postinfection at concentrations equal to or lower than the maximum nontoxic concentrations. By comprehensive two-dimensional gas chromatography-mass spectrometry analysis, eugenol (29.5%) and R-(-)-1,2-propanediol (10.7%) were identified as the major components of clove and ginger extracts, respectively. The antiviral effect of the pure eugenol itself was tested; it showed antiviral activity similar to that of clove extract, albeit at a lower level, which indicates that some other clove extract constituents, along with eugenol, are responsible for inactivation of FCV. These results showed that the aqueous extracts of clove and ginger hold promise for prevention of foodborne viral contamination.

4 August 2020 in Journal of Physics D: Applied Physics
Verified
Journal Article
Closed access
PDF file
AMAnkit Moldgy
Ankit Moldgy
GNGaurav Nayak
Gaurav Nayak
Hamada AboubakrHamada Aboubakr
Hamada Aboubakr
SGSagar Goyal
Sagar Goyal
PBPeter Bruggeman
Peter Bruggeman
Cold atmospheric pressure plasma has potential as a non-thermal processing technology to decontaminate food and food contact surfaces due to its ability to generate an abundance of reactive oxygen and nitrogen species with antimicrobial attributes at ambient conditions. In this study, we present a comparison on the effectiveness of surface decontamination against feline calicivirus (FCV) and Salmonella spp using four different plasma sources, a dielectric barrier discharge (DBD) in direct contact with the substrate and three remote plasma treatment sources: a 2D DBD, a volumetric DBD and a gliding arc discharge. The plasma sources were all operated in air at atmospheric pressure. The decontamination efficacy was enhanced by the presence of humidity on the sample surface and only direct contact between plasma and samples allowed the inactivation of pathogens on dry substrates. Across all sources, FCV was seen to be more susceptible to the plasma-generated species than Salmonella spp . The diminished effectiveness of the gliding arc discharge compared to the DBDs operating at the same power is most likely due to the low Henry’s law constant of NO, the dominant reactive species generated by the gliding arc. Control experiments illustrate that the co-existence of O 3 and NO 2 , as in the afterglow of the remote DBDs enhances the inactivation compared to the inactivation by O 3 or NO 2 only. A chemical kinetics model of the plasma effluent and the plasma treatments show a strong correlation between the gas-phase concentration of N 2 O 5 and inactivation of the virus. We experimentally show that the production of N 2 O 5 coincides with the enhanced generation of reactive nitrogen species in the liquid phase.