Sophora moorcroftiana, a Leguminosae shrub species that is restricted to the arid and semi-arid regions of the Qinghai-Tibet Plateau, is an ecologically important foundation species and exhibits substantial drought tolerance in the Plateau. There are no functional genomics resources in public databases for understanding the molecular mechanism underlying the drought tolerance of S. moorcroftiana. Therefore, we performed a large-scale transcriptome sequencing of this species under drought stress using the Illumina sequencing technology. A total of 62,348,602 clean reads were obtained. The assembly of the clean reads resulted in 146,943 transcripts, including 66,026 unigenes. In the assembled sequences, 1534 transcription factors were identified and classified into 23 different common families, and 9040 SSR loci, from di- to hexa-nucleotides, whose repeat number is greater than five, were presented. In addition, we performed a gene expression profiling analysis upon dehydration treatment. The results indicated significant differences in the gene expression profiles among the control, mild stress and severe stress. In total, 4687, 5648 and 5735 genes were identified from the comparison of mild versus control, severe versus control and severe versus mild stress, respectively. Based on the differentially expressed genes, a Gene Ontology annotation analysis indicated many dehydration-relevant categories, including ‘response to water ‘stimulus’ and ‘response to water deprivation’. Meanwhile, the Kyoto Encyclopedia of Genes and Genomes pathway analysis uncovered some important pathways, such as ‘metabolic pathways’ and ‘plant hormone signal transduction’. In addition, the expression patterns of 25 putative genes that are involved in drought tolerance resulting from quantitative real-time PCR were consistent with their transcript abundance changes as identified by RNA-seq. The globally sequenced genes covered a considerable proportion of the S. moorcroftiana transcriptome, and the expression results may be useful to further extend the knowledge on the drought tolerance of this plant species that survives under Plateau conditions.

Pinus massoniana is the major afforestation and vegetation restoration tree in southern China, and it plays an important role in the sustainable development of plantations. However, long-term single planting of P. massoniana has resulted in the decline of soil quality and forest productivity, and a soil fertility assessment is urgently needed. We selected P. massoniana plantations of four age stages for plot investigation and sampling to determine the soil physicochemical properties, microbial diversity and composition, and enzyme activities at different soil depths. The results showed that soil total phosphorus (TP) and available phosphorus (AP) decreased with the increase of age, especially low C/N ratio and high C/P and N/P ratio in the 30-year and 36-year stands, leading to P limitation. Meanwhile, the bacterial Shannon index also decreased with the increase of age and was positively correlated with AP, NO₃⁻-N, and pH. However, the fungal Shannon index decreased first and then increased with the increase of age; soil acid phosphatase (S-ACP) and urease activities showed a similar trend. Correlation analysis demonstrated that the increase of total organic carbon (TOC) and total nitrogen (TN) promoted the increase of fungal Shannon index, which was beneficial to the secretion of more enzymes. We found that soil physicochemical properties, microbial diversity, and enzyme activity decreased simultaneously when soil depths increased. Moreover, Acidobacteria and Basidiomycota were the most abundant bacterial and fungal communities, respectively, followed by Proteobacteria and Actinobacteria for bacteria and Ascomycota for fungi, and these microbial taxa were significantly affected by soil water content (SWC), TOC, AP, and C/P. In conclusion, this work reveals the potential correlation among soil physicochemical properties, microbial diversity and composition, and enzyme activities, and revealed potential correlations among them which will help to improve understanding of soil conditions and provide a reference for rational management of soil resources.

Bursaphelenchus xylophilus (Steiner&Buhrer) Nickle is a global quarantine pest that causes devastating mortality in pine species. The rapid and uncontrollable parasitic spread of this organism results in substantial economic losses to pine forests annually. In this study, we used the MaxEnt model and GIS software ArcGIS10.8 to predict the distribution of B. xylophilus based on collected distribution points and 19 environmental variables (with a correlation coefficient of|R| > 0.8) for the contemporary period (1970–2000), 2041–2060 (2050s), 2061–2080 (2070s), and 2081–2100 (2090s) under four shared socioeconomic pathways (SSPs). We conducted a comprehensive analysis of the key environmental factors affecting the geographical distribution of B. xylophilus and suitable distribution areas. Our results indicate that in current prediction maps B. xylophilus had potential suitable habitats in all continents except Antarctica, with East Asia being the region with the most highly suitable areas and the most serious epidemic area currently. Precipitation of the warmest quarter, temperature seasonality, precipitation of the wettest month, and maximum temperature of the warmest month were identified as key environmental variables that determine the distribution of B. xylophilus. Under future climatic conditions, the potential geographic distribution of B. xylophilus will expand relative to current conditions. In particular, under the SSP5-8.5 scenario in 2081–2100, suitable areas will expand to higher latitudes, and there will be significant changes in suitable areas in Europe, East Asia, and North America. These findings are crucial for future prevention and control management and monitoring.

Climate change considerably affects vegetation growth and may lead to changes in vegetation distribution. Leopard-skin camphor is an endangered species, and the main raw material for hawk tea, and has various pharmacodynamic functions. Studying the potential distribution of two leopard-skin camphor varieties under climate change should assist in the effective protection of these species. We collected the distribution point data for 130 and 89 Litsea coreana Levl. var. sinensis and L. coreana Levl. var. lanuginosa, respectively, and data for 22 environmental variables. We also predicted the potential distribution of the two varieties in China using the maximum entropy (MaxEnt) model and analyzed the key environmental factors affecting their distribution. Results showed that the two varieties are mainly located in the subtropical area south of the Qinling Mountains–Huai River line in the current and future climate scenarios, and the potentially suitable area for L. coreana Levl. var. lanuginosa is larger than that of L. coreana Levl. var. sinensis. Compared with current climatic conditions, the potentially suitable areas of the two leopard-skin camphor varieties will move to high-latitude and -altitude areas and the total suitable area will increase slightly, while moderately and highly suitable areas will be significantly reduced under future climatic scenarios. For example, under a 2070-RCP8.5 (representative of a high greenhouse gas emission scenario in the 2070s) climatic scenario, the highly suitable areas of L. coreana Levl. var. sinensis and L. coreana Levl. var. lanuginosa are 6900 and 300 km², and account for only 10.27% and 0.21% of the current area, respectively. Temperature is the key environmental factor affecting the potential distribution of the two varieties, especially the mean daily diurnal range (Bio2) and the min temperature of the coldest month (Bio6). The results can provide a reference for relevant departments in taking protective measures to prevent the decrease or extinction of the species under climate change.

Litsea coreana Levl. var. sinensis (Allen) Yang et P. H. Huang is a popular ethnic herb and beverage plant known for its high flavonoid content, which has been linked to a variety of pharmacological benefits and crucial health-promoting impacts in humans. The progress in understanding the molecular mechanisms of flavonoid accumulation in this plant has been hindered due to the deficiency of genomic and transcriptomic resources. We utilized a combination of Illumina and Oxford Nanopore Technology (ONT) sequencing to generate a de novo hybrid transcriptome assembly. In total, 126,977 unigenes were characterized, out of which 107,977 were successfully annotated in seven public databases. Within the annotated unigenes, 3,781 were categorized into 58 transcription factor families. Furthermore, we investigated the presence of four valuable flavonoids—quercetin-3-O-β-D-galactoside, quercetin-3-O-β-D-glucoside, kaempferol-3-O-β-D-galactoside, and kaempferol-3-O-β-D-glucoside in 98 samples, using high-performance liquid chromatography. A weighted gene co-expression network analysis identified two co-expression modules, MEpink and MEturquoise, that showed strong positive correlation with flavonoid content. Within these modules, four transcription factor genes (R2R3-MYB, NAC, WD40, and ARF) and four key enzyme-encoding genes (CHI, F3H, PAL, and C4H) emerged as potential hub genes. Among them, the R2R3-MYB (LcsMYB123) as a homologous gene to AtMYB123/TT2, was speculated to play a significant role in flavonol biosynthesis based on phylogenetic analysis. Our findings provided a theoretical foundation for further research into the molecular mechanisms of flavonoid biosynthesis. Additionally, The hybrid transcriptome sequences will serve as a valuable molecular resource for the transcriptional annotation of L. coreana var. sinensis, which will contribute to the improvement of high-flavonoid materials.