Wetlands regulate the balance of global organic carbon. Small changes in the carbon stocks of wetland ecosystem play a crucial role in the regional soil carbon cycle. However, an accurate estimation of carbon stocks is still be debated for China’s wetlands ecosystem due to the limitation of data collection and methodology. Here, we investigate the soil organic carbon (SOC) storage in a 1-m depth in China’s palustrine wetlands. A total of 1383 sample data were collected from palustrine wetlands in China. The data sources are divided into three parts, respectively, data collection from published literature, data from books, and actual measurement data of sample points. The results demonstrate that there is considerable SOC storage in China’s palustrine wetlands (9.945 Pg C), primarily abundant in the northeast, northwest arid and semi-arid as well as Qinghai-Tibet Plateau regions. The SOC density in per unit area soil was higher in the wetland area of northeast, southwest and Qinghai-Tibet plateau. Within China terrestrial scale, the temperature and precipitation differences caused by latitude were the main environmental factors affecting the organic carbon content. Furthermore, except for the southeast and south wetland region, SOC content decreased with depth.

Climate change is accelerating its impact on northern ecosystems. Northern peatlands store a considerable amount of C, but their response to climate change remains highly uncertain. In order to explore the feedback of a peatland in the Great Hing’an Mountains to future climate change, we simulated the response of the overall net ecosystem exchange (NEE), ecosystem respiration (ER), and gross primary production (GPP) during 2020–2100 under three representative concentration pathways (RCP2.6, RCP6.0, and RCP8.5). Under the RCP2.6 and RCP6.0 scenarios, the carbon sink will increase slightly until 2100. Under the RCP8.5 scenario, the carbon sink will follow a trend of gradual decrease after 2053. These results show that when meteorological factors, especially temperature, reach a certain degree, the carbon source/sink of the peatland ecosystem will be converted. In general, although the peatland will remain a carbon sink until the end of the 21st century, carbon sinks will decrease under the influence of climate change. Our results indicate that in the case of future climate warming, with the growing seasons experiencing overall dryer and warmer environments and changes in vegetation communities, peatland NEE, ER, and GPP will increase and lead to the increase in ecosystem carbon accumulation.