Significance: Light, a prevailing environmental factor, plays important roles in various processes during plant development and stress response. Whether light could also regulate stress-induced transcriptional memory, however, is not clear. Herein we reported that light signal is positively involved in salt-induced transcriptional memory of Δ ¹ -pyrroline-5-carboxylate synthetase 1 ( P5CS1 ) and subsequent proline accumulation. Furthermore, HY5-dependent light signaling is required for the maintenance of salt-induced H3K4me3 in P5CS1 during the recovery stage. This mechanism is likely operating during other stress as well, and could shed light on future research into the concerted effects of different environmental factors on plant response to stresses.

Summary: Root architecture remodelling is critical for forage moisture in water‐limited soil. DEEPER ROOTING 1 (DRO1) in Oryza, Arabidopsis, and Prunus has been reported to improve drought avoidance by promoting roots to grow downward and acquire water from deeper soil. In the present study, we found that ZmDRO1 responded more strongly to abscisic acid (ABA)/drought induction in Zea mays ssp. mexicana, an ancestral species of cultivated maize, than in B73. It was proposed that this is one of the reasons why Zea mays ssp. mexicana has a more noticeable change in the downward direction angle of the root and fewer biomass penalties under water‐deficient conditions. Thus, a robust, synthetic ABA/drought‐inducible promoter was used to control the expression of ZmDRO1^B73 in Arabidopsis and cultivated maize for drought‐resistant breeding. Interestingly, ABA‐inducible ZmDRO1 promoted a larger downward root angle and improved grain yield by more than 40% under water‐limited conditions. Collectively, these results revealed that different responses to ABA/drought induction of ZmDRO1 confer different drought avoidance abilities, and we demonstrated the application of ZmDRO1 via an ABA‐inducible strategy to alter the root architecture of modern maize to improve drought adaptation in the field.

DNA methylation is important for plant growth, development, and stress response. To understand DNA methylation dynamics in maize roots under water stress (WS), we reanalyzed DNA methylation sequencing data to profile DNA methylation and the gene expression landscape of two inbred lines with different drought sensitivities, as well as two of their derived recombination inbred lines (RILs). Combined with genotyping-by-sequencing, we found that the inheritance pattern of DNA methylation between RILs and parental lines was sequence-dependent. Increased DNA methylation levels were observed under WS and the methylome of drought-tolerant inbred lines were much more stable than that of the drought-sensitive inbred lines. Distinctive differentially methylated genes were found among diverse genetic backgrounds, suggesting that inbred lines with different drought sensitivities may have responded to stress in varying ways. Gene body DNA methylation showed a negative correlation with gene expression but a positive correlation with exon splicing events. Furthermore, a positive correlation of a varying extent was observed between small interfering RNA (siRNA) and DNA methylation, which at different genic regions. The response of siRNAs under WS was consistent with the differential DNA methylation. Taken together, our data can be useful in deciphering the roles of DNA methylation in plant drought-tolerance variations and in emphasizing its function in alternative splicing.

Drought stress is known to significantly limit crop growth and productivity. Lateral organ boundary domain (LBD) transcription factors—particularly class-I members—play essential roles in plant development and biotic stress. However, little information is available on class-II LBD genes related to abiotic stress in maize. Here, we cloned a maize class-II LBD transcription factor, ZmLBD5, and identified its function in drought stress. Transient expression, transactivation, and dimerization assays demonstrated that ZmLBD5 was localized in the nucleus, without transactivation, and could form a homodimer or heterodimer. Promoter analysis demonstrated that multiple drought-stress-related and ABA response cis-acting elements are present in the promoter region of ZmLBD5. Overexpression of ZmLBD5 in Arabidopsis promotes plant growth under normal conditions, and suppresses drought tolerance under drought conditions. Furthermore, the overexpression of ZmLBD5 increased the water loss rate, stomatal number, and stomatal apertures. DAB and NBT staining demonstrated that the reactive oxygen species (ROS) decreased in ZmLBD5-overexpressed Arabidopsis. A physiological index assay also revealed that SOD and POD activities in ZmLBD5-overexpressed Arabidopsis were higher than those in wild-type Arabidopsis. These results revealed the role of ZmLBD5 in drought stress by regulating ROS levels.

Core Ideas: Low P stress is a global issue for grain production. Significant phenotypic differences were detected among 13 traits in 356 maize lines under P‐sufficient and P‐deficient conditions. Significant single nucleotide polymorphisms (SNPs) and low‐P stress‐responsive genes were identified for 13 maize root traits based on a genome‐wide association study. Hap5, harboring 12 favorable SNPs, could enhance strong root systems and P absorption under low‐P stress. Phosphorus is an essential macronutrient required for normal plant growth and development. Determining the genetic basis of root traits will enhance our understanding of maize's ( Zea mays L.) tolerance to low‐P stress. Here, we identified significant phenotypic differences for 13 traits in maize seedlings subjected to P‐sufficient and P‐deficient conditions. Six extremely sensitive and seven low‐P stress tolerant inbreds were selected from 356 inbred lines of maize. No significant differences were observed between temperate and tropical–subtropical groups with respect to trait ratios associated with the adaptation to low‐P stress. The broad‐sense heritability of these traits ranged from relatively moderate (0.59) to high (0.90). Through genome‐wide association mapping with 541,575 informative single nucleotide polymorphisms (SNPs), 551, 1140 and 1157 significant SNPs were detected for the 13 traits in 2012, 2016 and both years combined, respectively, along with 23 shared candidate genes, seven of which overlapped with reported quantitative trait loci and genes for low‐P stress. Five haplotypes located in candidate gene GRMZM2G009544 were identified; among these, Hap5, harboring 12 favorable SNP alleles, showed significantly greater values for the root traits studied than the other four haplotypes under both experimental conditions. The candidate genes and favorable haplotypes and alleles identified here provide promising resources for genetic studies and molecular breeding for improving tolerance to abiotic stress in maize.