Chuanbo Huang

Mr. Chuanbo Huang

Peking University

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 July 2020 in IEEE/ACM Transactions on Computational Biology and Bioinformatics
Verified
Journal Article
Closed access
CCChunmei Cui
Chunmei Cui
CHChuanbo Huang
Chuanbo Huang
WZWanlu Zhou
Wanlu Zhou
XJXiangwen Ji
Xiangwen Ji
FZFenghong Zhang
Fenghong Zhang
Qinghua CuiQinghua Cui
Qinghua Cui
Recently, it was confirmed that ACE2 is the receptor of SARS-CoV-2, the pathogen causing the recent outbreak of severe pneumonia around the world. It is confused that ACE2 is widely expressed across a variety of organs and is expressed moderately but not highly in lung, which, however, is the major infected organ. Therefore, we hypothesized that there could be some other genes playing key roles in the entry of SARS-CoV-2 into human cells. Here we found that AGTR2 (angiotensin II receptor type 2), a G-protein coupled receptor, has interaction with ACE2 and is highly expressed in lung with a high tissue specificity. More importantly, simulation of 3D structure based protein-protein interaction reveals that AGTR2 shows a higher binding affinity with the Spike protein of SARS-CoV-2 than ACE2 (energy: -8.2 vs. -5.1 [kcal/mol]). A number of compounds, biologics and traditional Chinese medicine that could decrease the expression level of AGTR2 were predicted. Finally, we suggest that AGTR2 could be a putative novel gene for the the entry of SARS-CoV-2 into human cells, which could provide different insight for the research of SARS-COV-2 proteins with their receptors.

16 September 2021 in Arteriosclerosis, Thrombosis, and Vascular Biology
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Journal Article
Closed access
PDF file
SZShumin Zhang
Shumin Zhang
ZLZhujiang Liu
Zhujiang Liu
NXNan Xie
Nan Xie
CHChuanbo Huang
Chuanbo Huang
ZLZhiqing Li
Zhiqing Li
WKWei Kong
Wei Kong

4 February 2020 in Preprints.org
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Preprint
Open access
PDF file
Qinghua CuiQinghua Cui
Qinghua Cui
CHChuanbo Huang
Chuanbo Huang
XJXiangwen Ji
Xiangwen Ji
WZWanlu Zhang
Wanlu Zhang
FZFenghong Zhang
Fenghong Zhang
LWLiang Wang
Liang Wang
Most recently, an outbreak of severe pneumonia caused by the infection of 2019-nCoV, a novel coronavirus first identified in Wuhan, China, imposes serious threats to public health. Many important aspects about 2019-nCoV remain largely unknown, among which, the limitation of antiviral therapies represents one of the most critical problems. More recently, it was confirmed that human ACE2 is the receptor for the entry of 2019-nCoV into lower respiratory tract epithelial cells. Give this observation, it is thus expected that the virus could be inhibited if we decrease the expression of ACE2. Here by screening two databases, Connectivity Map (CMap) and our JeaMoon Map (JMap), we identified a number of candidate agents that decrease ACE2 expression. CMap analysis identified 5 compounds, among which, Azathioprine is a possible therapeutic strategy for anti-2019-nCoV. Moreover, JMap analysis revealed a number of comounds, biologics, and traditional Chinese medicine, among which, Andrographis, Urtica, Sambucus, Astragalus, valproic acid, butyrate, and epoxomicin represent the most significant and possible strategies for anti-2019-nCoV therapies. This study provides a number of clues and possible therapeutic strategies for 2019-nCoV prevention and treatment.

13 July 2020 in bioRxiv
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Preprint
Open access
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CHChuanbo Huang
Chuanbo Huang
JYJichun Yang
Jichun Yang
Qinghua CuiQinghua Cui
Qinghua Cui
One big class of drugs are chemical small molecules (CSMs), but the majority of CSMs are in very low druggable potential. Therefore, it is quite important to predict drug-related properties (druggable properties) for candidate CSMs. Currently, although a number of druggable properties (e.g. logP and pKa) can be calculated by in silico methods, the identification of druggable CSMs is still at high risk and new quantitative metrics for the druggable potential of CSMs are increasingly needed. Here, we presented normalized bond energy (NBE), a new metric for the above purpose. By applying NBE to the DrugBank CSMs whose properties are largely known, we revealed that NBE is able to describe a number of critical druggable properties including logP, pKa, membrane permeability, blood-brain barrier penetration, and human intestinal absorption. Moreover, given that the human endogenous metabolites could be served as an important resource for drug discovery, we applied NBE to the metabolites in the Human Metabolome Database. As a result, NBE shows a significant difference in metabolites from various body fluids and is correlated with some important properties including melting point and water solubility.