Using chlorophyll (Chl) a fluorescence many aspects of the photosynthetic apparatus can be studied, both in vitro and, noninvasively, in vivo. Complementary techniques can help to interpret changes in the Chl a fluorescence kinetics. Kalaji et al. (Photosynth Res 122:121–158, 2014a) addressed several questions about instruments, methods and applications based on Chl a fluorescence. Here, additional Chl a fluorescence-related topics are discussed again in a question and answer format. Examples are the effect of connectivity on photochemical quenching, the correction of F _V /F _M values for PSI fluorescence, the energy partitioning concept, the interpretation of the complementary area, probing the donor side of PSII, the assignment of bands of 77 K fluorescence emission spectra to fluorescence emitters, the relationship between prompt and delayed fluorescence, potential problems when sampling tree canopies, the use of fluorescence parameters in QTL studies, the use of Chl a fluorescence in biosensor applications and the application of neural network approaches for the analysis of fluorescence measurements. The answers draw on knowledge from different Chl a fluorescence analysis domains, yielding in several cases new insights.

Environmental parameters and the contamination of soil with heavy metals can have a negative impact on the efficiency of the photosynthetic apparatus of the mod

Heavy metals (HMs) contamination of soils is a major problem occurring worldwide. Utility of energy crops for biofuel feedstock production systems offers a feasible solution for a commercial exploitation of an arable land contaminated with HMs. Experiments involved field testing of Miscanthus x giganteus and Spartina pectinata cultivated on HMs-contaminated soil with standard NPK fertilizers and commercially available microbial inoculum. Biomass yield, water content, macronutrients (N, P, K, Mg, Ca), and heavy metal (Cd, Pb, Zn) concentrations in plant shoots were assessed at the end of the first and the second growing season. Independently of the applied fertilizers, Miscanthus x giganteus produced higher biomass yield while contrary results were obtained for S. pectinata. Higher HMs content in plants influenced the status of the mineral macronutrients in particular N and K. Occurrence of hasted senescence induced by drought in the second growing season caused reduction in the concentrations of all elements (except Pb), due to earlier rhizomes relocation.

The aim of this study was to investigate the effect of autochthonous microorganisms present in soil collected from heavy metal (HM) uncontaminated (Pb ≈ 59 mg kg⁻¹, Cd ≈ 0.4 mg kg⁻¹, Zn ≈ 191 mg kg⁻¹), moderately (Pb ≈ 343 mg kg⁻¹, Cd ≈ 12 mg kg⁻¹, Zn ≈ 1876 mg kg⁻¹), and highly (Pb ≈ 1586 mg kg⁻¹, Cd ≈ 57 mg kg⁻¹, Zn ≈ 3280 mg kg⁻¹) contaminated sites on Zea mays elemental composition, physiological status, and growth parameters. For this purpose, half of the collected soil was sterilized and soil characterization was performed. After 45 days of cultivation, the presence of HM in the soil negatively affected photosynthesis and transpiration rates, relative chlorophyll content, anthocyanins index, chlorophyll fluorescence parameters, and content of oxidative stress products (H₂O₂ and Malondialdehyde) of Zea mays, while soil sterilization had a positive effect on those parameters. Average percentage of colonization of root segments by arbuscular mycorrhiza fungi decreased with an increase of HM contamination in the soil. The increase in shoot concentration of HMs, particularly Cd and Zn, was a result of contaminated soils sterilization. Aboveground biomass of maize cultivated on sterilized soil was 3-fold, 1.5-fold, and 1.5-fold higher for uncontaminated, moderately contaminated and highly contaminated soils respectively when compared to nonsterilized soils. Contrary to our expectation, autochthonous microflora did not improve plant growth and photosynthetic performance; in fact, they had a negative effect on those processes although they did reduce concentration of HMs in the shoots grown on contaminated soils.