Abhay Kotnala

Dr. Abhay Kotnala

Walker Department of Mechanical Engineering, The University of Texas at Austin, Austin, TX 78712, USA
orcid

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 January 2014 in Nano Letters
Verified
Journal Article
Closed access
AKAbhay Kotnala
Abhay Kotnala
RGReuven Gordon
Reuven Gordon

21 May 2014 in Biomedical Optics Express
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Journal Article
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AKAbhay Kotnala
Abhay Kotnala
RGReuven Gordon
Reuven Gordon
Here we report on the use of double-nanohole (DNH) optical tweezers as a label-free and free-solution single-molecule probe for protein–DNA interactions. Using this approach, we demonstrate the unzipping of individual 10 base pair DNA-hairpins, and quantify how tumor suppressor p53 protein delays the unzipping. From the Arrhenius behavior, we find the energy barrier to unzipping introduced by p53 to be 2 × 10−20 J, whereas cys135ser mutant p53 does not show suppression of unzipping, which gives clues to its functional inability to suppress tumor growth. This transformative approach to single molecule analysis allows for ultra-sensitive detection and quantification of protein–DNA interactions to revolutionize the fight against genetic diseases.

20 February 2015 in The Analyst
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Journal Article
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ABAhmed A. Al Balushi
Ahmed A. Al Balushi
AKAbhay Kotnala
Abhay Kotnala
SWSkyler Wheaton
Skyler Wheaton
RGRyan M. Gelfand
Ryan M. Gelfand
YRYashaswini Rajashekara
Yashaswini Rajashekara
RGReuven Gordon
Reuven Gordon
Recent advances in nanoaperture optical tweezers have enabled studies of single nanoparticles like proteins in label-free, free-solution environments.

13 December 2019 in Nano Letters
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Journal Article
Closed access
AKAbhay Kotnala
Abhay Kotnala
PKPavana Siddhartha Kollipara
Pavana Siddhartha Kollipara
JLJingang Li
Jingang Li
YZYuebing Zheng
Yuebing Zheng

7 August 2013 in Lab on a Chip
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Journal Article
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AKAbhay Kotnala
Abhay Kotnala
DDDamon DePaoli
Damon DePaoli
RGReuven Gordon
Reuven Gordon
We use a double nanohole (DNH) optical trap to quantify the size and concentration of nanoparticles in solution. The time to trap shows a linear dependence with nanosphere size and a −2/3 power dependence with nanosphere concentration, which is in agreement with simple microfluidic considerations. The DNH approach has size-specificity on the order of a few nanometers, which was used to selectively quantify particles of a single size within a heterogeneous solution. By looking at individual trapping events, it is in principle possible to extend this approach to the ultimate limit of a single particle concentration, while also being able to operate at high concentrations in the same configuration. In addition, the DNH trap allows us to hold onto individual particles and thereby study constituents of a heterogeneous mixture. By repeating the trapping measurements on spherical particles of different refractive index, we found that the transmission step that indicates trapping scales empirically with the Clausius–Mossotti factor. This approach may be applied to several sensing applications, such as in the study of virus populations, where concentrations vary over many orders of magnitude.

6 March 2020 in Light: Science & Applications
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Journal Article
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Linhan LinLinhan Lin
Linhan Lin
PKPavana Siddhartha Kollipara
Pavana Siddhartha Kollipara
AKAbhay Kotnala
Abhay Kotnala
TJTaizhi Jiang
Taizhi Jiang
YLYaoran Liu
Yaoran Liu
YZYuebing Zheng
Yuebing Zheng
Optomechanics arises from the photon momentum and its exchange with low-dimensional objects. It is well known that optical radiation exerts pressure on objects, pushing them along the light path. However, optical pulling of an object against the light path is still a counter-intuitive phenomenon. Herein, we present a general concept of optical pulling—opto-thermoelectric pulling (OTEP)—where the optical heating of a light-absorbing particle using a simple plane wave can pull the particle itself against the light path. This irradiation orientation-directed pulling force imparts self-restoring behaviour to the particles, and three-dimensional (3D) trapping of single particles is achieved at an extremely low optical intensity of 10−2 mW μm−2. Moreover, the OTEP force can overcome the short trapping range of conventional optical tweezers and optically drive the particle flow up to a macroscopic distance. The concept of self-induced opto-thermomechanical coupling is paving the way towards freeform optofluidic technology and lab-on-a-chip devices.