Akshay Uttarkar

Mr. Akshay Uttarkar

RV College of Engineering, Bengaluru, India
orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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31 March 2022 in Bioinformation
Verified
Journal Article
Open access
Shaban AhmadShaban Ahmad
Shaban Ahmad
PBPiyush Bhanu
Piyush Bhanu
JKJitendra Kumar
Jitendra Kumar
RPRavi Kant Pathak
Ravi Kant Pathak
DMDharmendra Mallick
Dharmendra Mallick
VMVachaspati Mishra
Vachaspati Mishra
It is of interest to document the Molecular Dynamics Simulation and docking analysis of NF-κB target with sulindac sodium in combating COVID-19 for further consideration. Sulindac is a nonsteroidal anti-inflammatory drug (NSAID) of the arylalkanoic acid class that is marketed by Merck under the brand name Clinoril. We show the binding features of sulindac sodium with NF-κB that can be useful in drug repurposing in COVID-19 therapy.

1 November 2020 in Computers in Biology and Medicine
Verified
Journal Article
Closed access
SSSinosh Skariyachan
Sinosh Skariyachan
DGDharshini Gopal
Dharshini Gopal
SCShweta Chakrabarti
Shweta Chakrabarti
PKPriya Kempanna
Priya Kempanna
Akshay UttarkarAkshay Uttarkar
Akshay Uttarkar
VNVidya Niranjan
Vidya Niranjan

22 November 2021 in Infection, Genetics and Evolution
Verified
Journal Article
Open access
SSSinosh Skariyachan
Sinosh Skariyachan
DGDharshini Gopal
Dharshini Gopal
DDDhrithi Deshpande
Dhrithi Deshpande
AJAnusha Joshi
Anusha Joshi
Akshay UttarkarAkshay Uttarkar
Akshay Uttarkar
VNVidya Niranjan
Vidya Niranjan
The present study aimed to predict the binding potential of carbon nanotube and nano fullerene towards multiple targets of SARS-CoV-2. Based on the virulent functions, the spike glycoprotein, RNA-dependent RNA polymerase, main protease, papain-like protease, and RNA binding domain of the nucleocapsid proteins of SARS-CoV-2 were prioritized as the molecular targets and their three-dimensional (3D) structures were retrieved from the Protein Data Bank. The 3D structures of carbon nanotubes and nano-fullerene were computationally modeled, and the binding potential of these nanoparticles to the selected molecular targets was predicted by molecular docking and molecular dynamic (MD) simulations. The drug-likeness and pharmacokinetic features of the lead molecules were computationally predicted. The current study suggested that carbon fullerene and nanotube demonstrated significant binding towards the prioritized multi-targets of SARS-CoV-2. Interestingly, carbon nanotube showed better interaction with these targets when compared to carbon fullerene. MD simulation studies clearly showed that the interaction of nanoparticles and selected targets possessed stability and conformational changes. This study revealed that carbon nanotubes and fullerene are probably used as effectual binders to multiple targets of SARS-CoV-2, and the study offers insights into the experimental validation and highlights the relevance of utilizing carbon nanomaterials as a therapeutic remedy against COVID-19.

5 January 2022 in Journal of Biomolecular Structure and Dynamics
Verified
Journal Article
Closed access
Akshay UttarkarAkshay Uttarkar
Akshay Uttarkar
AKAlice Preethi Kishore
Alice Preethi Kishore
SMSudhanva MS
Sudhanva MS
SRshobith rangappa
shobith rangappa
Raviraj KusanurRaviraj Kusanur
Raviraj Kusanur
VNVidya Niranjan
Vidya Niranjan
Triple negative breast cancer constitutes to about 21.8 percent of the total breast cancer related cases. Its ability to affect young ladies and in pre-menstrual stage makes this a disease of concern worldwide. The current treatment regimens involve chemotherapy which are used for treatment of other cancer types. In this regard, there is a need for specific and targeted drug candidate for its effective treatment. In the current study, assessment of coumarin derivative 2-(2-(6- Methyl-2-Oxo-2H-chromen-4-yl) acetamido)-3-phenylpropanoic acid is carried out both In-silico and In-vitro methods. Frizzled transmembrane proteins of Wingless-related integration site signaling pathway was targeted in which Frizzled-7 proved to a prospective target and showed a binding energy of −6.78 kcal/mol. The complex was subjected to molecular dynamics simulation for 200 ns and showed stable interaction with cysteine rich domain of the receptor. Cell proliferation, viability and apoptosis assay were performed on MDA-MB-231 and MDA-MB-468 cell lines with an IC50 value of 81.23 and 84.68 µM, respectively. The results provide a drug candidate which is derivative of a natural compound with targeted TNBC inhibitory effect. Communicated by Ramaswamy H. Sarma Graphical Abstract

1 May 2022 in The FEBS Journal
Verified
Journal Article
Closed access
VPVanitha Pa
Vanitha Pa
PVPreethi Vijayaraghavareddy
Preethi Vijayaraghavareddy
Akshay UttarkarAkshay Uttarkar
Akshay Uttarkar
ADAkashata Dawane
Akashata Dawane
SDSujitha D
Sujitha D
RVRamu Vemanna
Ramu Vemanna

30 November 2024 in Aspects of Molecular Medicine
Verified
Journal Article
Open access
UDUddalak Das
Uddalak Das
LCLavanya Chandramouli
Lavanya Chandramouli
Akshay UttarkarAkshay Uttarkar
Akshay Uttarkar
JKJitendra Kumar
Jitendra Kumar
VNVidya Niranjan
Vidya Niranjan