Bitewulign Kassa Mekonnen

Dr. Bitewulign Kassa Mekonnen

Academia Sinica
orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
1 May 2020 in Biomedical Signal Processing and Control
Verified
Journal Article
Closed access
BMBitewulign Kassa Mekonnen
Bitewulign Kassa Mekonnen
WYWebb Yang
Webb Yang
Tung-Han HsiehTung-Han Hsieh
Tung-Han Hsieh
SLShien-Kuei Liaw
Shien-Kuei Liaw
FYFu-Liang Yang
Fu-Liang Yang

10 April 2021 in Diagnostics
Verified
Journal Article
Open access
PDF file
BMBitewulign Kassa Mekonnen
Bitewulign Kassa Mekonnen
Tung-Han HsiehTung-Han Hsieh
Tung-Han Hsieh
DTDian-Fu Tsai
Dian-Fu Tsai
Shien-Kuei LiawShien-Kuei Liaw
Shien-Kuei Liaw
FYFu-Liang Yang
Fu-Liang Yang
Sheng-Lung HuangSheng-Lung Huang
Sheng-Lung Huang
The segmentation of capillaries in human skin in full-field optical coherence tomography (FF-OCT) images plays a vital role in clinical applications. Recent advances in deep learning techniques have demonstrated a state-of-the-art level of accuracy for the task of automatic medical image segmentation. However, a gigantic amount of annotated data is required for the successful training of deep learning models, which demands a great deal of effort and is costly. To overcome this fundamental problem, an automatic simulation algorithm to generate OCT-like skin image data with augmented capillary networks (ACNs) in a three-dimensional volume (which we called the ACN data) is presented. This algorithm simultaneously acquires augmented FF-OCT and corresponding ground truth images of capillary structures, in which potential functions are introduced to conduct the capillary pathways, and the two-dimensional Gaussian function is utilized to mimic the brightness reflected by capillary blood flow seen in real OCT data. To assess the quality of the ACN data, a U-Net deep learning model was trained by the ACN data and then tested on real in vivo FF-OCT human skin images for capillary segmentation. With properly designed data binarization for predicted image frames, the testing result of real FF-OCT data with respect to the ground truth achieved high scores in performance metrics. This demonstrates that the proposed algorithm is capable of generating ACN data that can imitate real FF-OCT skin images of capillary networks for use in research and deep learning, and that the model for capillary segmentation could be of wide benefit in clinical and biomedical applications.

1 September 2019
Verified
Conference Paper
Closed access
BMBitewulign Kassa Mekonnen
Bitewulign Kassa Mekonnen
DTDian-Fu Tsai
Dian-Fu Tsai
Tung-Han HsiehTung-Han Hsieh
Tung-Han Hsieh
FYFu-Liang Yang
Fu-Liang Yang
SLShien-Kuei Liaw
Shien-Kuei Liaw
SHSheng-Lung Huang
Sheng-Lung Huang
The purpose of this paper is to segment red blood cells from the Full-Field OCT data of human skin, using deep learning technique. Test results show the developed technique is very promising for real time detection and counting of red blood cells.

4 October 2020
Verified
Conference Paper
Closed access
BMBitewulign Kassa Mekonnen
Bitewulign Kassa Mekonnen
WYWebb Yang
Webb Yang
Tung-Han HsiehTung-Han Hsieh
Tung-Han Hsieh
SLShien-Kuei Liaw
Shien-Kuei Liaw
FYFu-Liang Yang
Fu-Liang Yang
we explored the use of convolutional neural network for classification of near-infrared spectra measured from glucose aqueous with various concentrations. Our technique could be extended to other kinds of spectrums and benefit in different topics.