Cheng-fan Lee

Dr. Cheng-fan Lee

orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 May 2023 in Neoplasia
Verified
Journal Article
Open access
Chi-Ju KimChi-Ju Kim
Chi-Ju Kim
AGAnna Lk Gonye
Anna Lk Gonye
KTKevin Truskowski
Kevin Truskowski
CLCheng-fan Lee
Cheng-fan Lee
YCYoon-Kyoung Cho
Yoon-Kyoung Cho
SASarah R. Amend
Sarah R. Amend
The emergence of chemotherapy resistance drives cancer lethality in cancer patients, with treatment initially reducing overall tumor burden followed by resistant recurrent disease. While molecular mechanisms underlying resistance phenotypes have been explored, less is known about the cell biological characteristics of cancer cells that survive to eventually seed the recurrence. To identify the unique phenotypic characteristics associated with survival upon chemotherapy exposure, we characterized nuclear morphology and function as prostate cancer cells recovered following cisplatin treatment. Cells that survived in the days and weeks after treatment and resisted therapy-induced cell death showed increasing cell size and nuclear size, enabled by continuous endocycling resulting in repeated whole genome doubling. We further found that cells that survive after therapy release were predominantly mononucleated and likely employ more efficient DNA damage repair. Finally, we show that surviving cancer cells exhibit a distinct nucleolar phenotype and increased rRNA levels. These data support a paradigm where soon after therapy release, the treated population mostly contains cells with a high level of widespread and catastrophic DNA damage that leads to apoptosis, while the minority of cells that have successful DDR are more likely to access a pro-survival state. These findings are consistent with accession of the polyaneuploid cancer cell (PACC) state, a recently described mechanism of therapy resistance and tumor recurrence. Our findings demonstrate the fate of cancer cells following cisplatin treatment and define key cell phenotypic characteristics of the PACC state. This work is essential for understanding and, ultimately, targeting cancer resistance and recurrence.

16 December 2024 in Cell Cycle
Verified
Journal Article
Open access
CLCheng-fan Lee
Cheng-fan Lee
KPKenneth J. Pienta
Kenneth J. Pienta
SASarah R. Amend
Sarah R. Amend
Cells regulate the expression of cell cycle-related genes, including cyclins essential for mitosis, through the transcriptional activity of the positive transcription elongation factor b (P-TEFb), a complex comprising CDK9, cyclin T, and transcription factors. P-TEFb cooperates with CDK7 to activate RNA polymerase. In response to DNA stress, the cell cycle shifts from mitosis to repair, triggering cell cycle arrest and the activation of DNA repair genes. This tight coordination between transcription, cell cycle progression, and DNA stress response is crucial for maintaining cellular integrity. Cyclin-dependent kinases CDK7 and CDK9 are central to both transcription and cell cycle regulation. CDK7 functions as the CDK-activating kinase (CAK), essential for activating other CDKs, while CDK9 acts as a critical integrator of signals from both the cell cycle and transcriptional machinery. This review elucidates the mechanisms by which CDK7 and CDK9 regulate the mitotic process and cell cycle checkpoints, emphasizing their roles in balancing cell growth, homeostasis, and DNA repair through transcriptional control.

20 February 2022 in Clinical and Translational Medicine
Verified
Journal Article
Open access
PDF file
CLCheng-fan Lee
Cheng-fan Lee
YCYu‐An Chen
Yu‐An Chen
EHElizabeth Hernandez
Elizabeth Hernandez
RPRey‐Chen Pong
Rey‐Chen Pong
SMShihong Ma
Shihong Ma
JHJer-Tsong Hsieh
Jer-Tsong Hsieh
Background: Neuroendocrine prostate cancer (NEPC) is often diagnosed as a sub‐type from the castration‐resistant prostate cancer (CRPC) recurred from the second generation of anti‐androgen treatment and is a rapidly progressive fatal disease. The molecular mechanisms underlying the trans‐differentiation from CRPC to NEPC are not fully characterized, which hampers the development of effective targeted therapy.Methods: Bioinformatic analyses were conducted to determine the clinical correlation of sphingosine kinase 1 (SphK1) in CRPC progression. To investigate the transcriptional regulation SphK1 and neuroendocrine (NE) transcription factor genes, both chromosome immunoprecipitation and luciferase reporter gene assays were performed. To demonstrate the role of SphK1 in NEPC development, neurosphere assay was carried out along with several biomarkers determined by quantitative PCR and western blot. Furthermore, in vivo NEPC xenograft models and patient‐derived xenograft (PDX) model were employed to determine the effect of SphK1 inhibitors and target validation.Results: Significant prevalence of SphK1 in NEPC development is observed from clinical datasets. SphK1 is transcriptionally repressed by androgen receptor‐RE1‐silencing transcription factor (REST) complex. Furthermore, sphingosine 1‐phosphate produced by SphK1 can modulate REST protein turnover via MAPK signaling pathway. Also, decreased REST protein levels enhance the expression of NE markers in CRPC, enabling the transition to NEPC. Finally, specific SphK1 inhibitors can effectively inhibit the growth of NEPC tumors and block the REST protein degradation in PDX.Conclusions: SphK1 plays a central role in NEPC development, which offers a new target for this lethal cancer using clinically approved SphK1 inhibitors.

1 January 2025 in The World Journal of Men's Health
Verified
Journal Article
Open access
PDF file
CCChung-Hsin Chen
Chung-Hsin Chen
HHHsiang-Po Huang
Hsiang-Po Huang
KCKai-Hsiung Chang
Kai-Hsiung Chang
MLMing-Shyue Lee
Ming-Shyue Lee
CLCheng-fan Lee
Cheng-fan Lee
BGBust Groups
Bust Groups
Chen CH, et al. World J Mens Health. 2024 May;42:e59. https://doi.org/10.5534/wjmh.230344

1 February 2021 in The International Journal of Biochemistry & Cell Biology
Verified
Journal Article
Closed access
ALAshley M. Lakoduk
Ashley M. Lakoduk
CLCheng-fan Lee
Cheng-fan Lee
PCPing-Hung Chen
Ping-Hung Chen

28 November 2025 in Cancers
Verified
Journal Article
Open access
PDF file
YLYuan-Chi Lin
Yuan-Chi Lin
CCChung-Hsin Chen
Chung-Hsin Chen
MLMing-Shyue Lee
Ming-Shyue Lee
CLCheng-fan Lee
Cheng-fan Lee
PHPei-Wen Hsiao
Pei-Wen Hsiao
YPYeong-Shiau Pu
Yeong-Shiau Pu
Prostate cancer (PC) remains a major cause of cancer deaths in men. The serum biomarker prostate-specific antigen (PSA) lacks specificity in distinguishing clinically significant PC (sPC) from insignificant PC (isPC), leading to overdiagnosis and overtreatment. Although magnetic resonance imaging (MRI) improves detection, it is expensive, is time-consuming, and may involve inter-reader discrepancies. Recently, metabolomics, which has a high analytical sensitivity and broad molecular-feature coverage, has emerged as a promising tool to risk-stratify PC. This review examined studies of blood and urine metabolomics for sPC biomarker identification. Significant metabolite changes in sPC patients often involved fatty acid metabolism, sphingolipid metabolism, glycolysis, the citric acid cycle, purine/pyrimidine metabolism, and tyrosine/phenylalanine metabolism. Specifically, more than one study reported increased lactate and phenylalanine levels, along with decreased tyrosine, xanthine, and histidine levels, in sPC patients. Several metabolic panels outperformed serum PSA in predicting sPC, particularly when combined with clinical factors. Among these, two urine-based tests may have higher accuracy in predicting sPC than most current commercially available assays. However, direct comparison between studies may be inappropriate due to methodological heterogeneity, the variability in biospecimen types, inconsistent use of digital rectal examinations, and different sPC definitions and predictive endpoints. Most relevant studies were of small sample size or lacked external validation. Despite these challenges, metabolomics-based liquid biopsies show strong potential for improving sPC detection. Future research should focus on protocol standardization, MRI integration, absolute metabolite quantification, and validation in large and independent cohorts to enhance model credibility.