Rice is a staple food for more than half of the world’s population. Modern rice varieties have been developed for high yield and quality; however, there has been a substantial loss of diversity. A greater number of genetically dynamic landraces could offer valuable and useful genetic resources for rice improvement. In this study, the genetic diversity and population structure of 365 accessions of lowland and upland landraces from four populations from different geographical regions of Thailand were investigated using 75 SNP markers. Clustering analyses using maximum likelihood, Principal Coordinate Analysis (PCoA), and Discriminant Analysis of Principal Components (DAPC) clustered these landraces into two main groups, corresponding to indica and japonica groups. The indica group was further clustered into two subgroups according to the DAPC and STRUCTURE analyses (K = 3). The analysis of molecular variance (AMOVA) analysis results revealed that 91% of the variation was distributed among individuals, suggesting a high degree of genetic differentiation among rice accessions within the populations. Pairwise F_ST showed the greatest genetic differentiation between the northeastern and southern populations and the smallest genetic differentiation between the northern and northeastern populations. Isolation-by-distance analysis based on a Mantel test indicated a significant relationship between the genetic distance and geographic distance among the Thai rice landraces. The results from this study provide insight into the genetic diversity of Thai rice germplasm, which will enhance the germplasm characterization, conservation, and utilization in rice genetics and breeding.

The reproductive stage of rice is the most sensitive to heat stress, which can lead to spikelet sterility. Thus, heat-tolerant and heat-susceptible genotypes were used to investigate their differences in terms of phenotypic responses and expression changes ofHsfgenes at the pre-flowering stage under heat stress. Results clearly showed that panicles had the highest temperature compared with other plant parts under both natural and heated conditions. However, the temperatures of tolerant and susceptible genotypes were not significantly different. In terms of spikelet fertility, the tolerant lines M9962 and M7988 had high seed set because their anther dehiscence, pollen viability and pollen germination were only slightly affected. In contrast, the susceptible line Sinlek showed severe effects at all steps of fertilization, and the pollen viability of M7766 was slightly affected under heat stress but was more affected in terms of anther dehiscence and pollen germination. Both susceptible lines showed dramatically decreased seed set. In addition, the expression of sixHsfAgenes in the flag leaves and spikelets at the R2 stage of plants under heat stress showed different responses. Notably, expression of theHsfA2agene was predominantly upregulated in the flag leaf and spikelets under heat stress in M9962. Therefore, it can be concluded that heat stress has severe effects on the stamen, and that different genotypes have different susceptibilities to heat stress.

Heat stress during the reproductive and grain-filling stages leads to severe yield losses in rice, especially in irrigated areas during the dry season in Thailand. Thus, breeding for heat-tolerant rice is one of the strategies for developing rice crops adapted to the effects of high temperature in major growing regions. M9962, a fast neutron-induced mutant, was identified as a heat-tolerant line that was then used as a donor parent and crossed with the Phisanulok 2 (PSL2) cultivar (the recurrent parent) in a backcross breeding programme. Heat tolerance scoring under controlled greenhouse and field conditions was based on the percentage of spikelet fertility. Yield trials for the BC2F7 and BC3F6 lines were subsequently conducted under field conditions at three locations and under controlled greenhouse conditions during the dry season of 2019 (DS2019). In the early generation, 210 plants of the BC1F1 population and 440 plants of BC2F1 population were evaluated for their heat tolerance, and the spikelet fertility distribution within the BC1F1, BC2F1 and BC3F1 populations showed a skewed-right pattern. In addition, most rice plants in every generation were heat sensitive. Finally, compared with PSL2, the four-candidate heat-tolerant lines exhibited a high percentage of spikelet fertility and high yield. In addition, the one candidate line, BC2F7-6-5-4-1-1-21 was most similar to PSL2 in terms of genetic background, plant type and grain quality. Thus, backcross breeding programmes via the spikelet fertility can be used as an indirect trait to select for heat tolerance.