Dan Du

Dr. Dan Du

Southwest University, Chongqing, China
orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 December 2020 in Plant Biotechnology Journal
Verified
Journal Article
Open access
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DDDan Du
Dan Du
CZChangwei Zhang
Changwei Zhang
YXYadi Xing
Yadi Xing
XLXin Lu
Xin Lu
LCLinjun Cai
Linjun Cai
GHGuanghua He
Guanghua He
Summary: Nucleotide‐binding site–leucine‐rich repeat (NB‐LRR) resistance proteins are critical for plant resistance to pathogens; however, their mechanism of activation and signal transduction is still not well understood. We identified a mutation in an as yet uncharacterized rice coiled‐coil (CC)‐NB‐LRR, Oryza sativa RPM1‐like resistance gene 1 (OsRLR1), which leads to hypersensitive response (HR)‐like lesions on the leaf blade and broad‐range resistance to the fungal pathogen Pyricularia oryzae (syn. Magnaporthe oryzae) and the bacterial pathogen Xanthomonas oryzae pv. oryzae, together with strong growth reduction. Consistently, OsRLR1‐overexpression lines showed enhanced resistance to both pathogens. Moreover, we found that OsRLR1 mediates the defence response through direct interaction in the nucleus with the transcription factor OsWRKY19. Down‐regulation of OsWRKY19 in the rlr1 mutant compromised the HR‐like phenotype and resistance response, and largely restored plant growth. OsWRKY19 binds to the promoter of OsPR10 to activate the defence response. Taken together, our data highlight the role of a new residue involved in the NB‐LRR activation mechanism, allowing identification of a new NB‐LRR downstream signalling pathway.

13 August 2018 in Plant Biology
Verified
Journal Article
Closed access
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DDDan Du
Dan Du
MLM. Liu
M. Liu
YXY. Xing
Y. Xing
XCX. Chen
X. Chen
YZY. Zhang
Y. Zhang
GHGuanghua He
Guanghua He

12 January 2025 in Plants
Verified
Journal Article
Open access
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JZJianling Zhang
Jianling Zhang
XLXiaoying Liu
Xiaoying Liu
ZYZuozhen Yin
Zuozhen Yin
TZTiantian Zhao
Tiantian Zhao
DDDan Du
Dan Du
YPYu Pan
Yu Pan
The bHLH (basic helix–loop–helix) transcription factors function as crucial regulators in numerous biological processes including abiotic stress responses and plant development. According to our RNA-seq analysis of tomato seedlings under salt stress, we found that, although the bHLH gene family in tomato has been studied, there are still so many tomato bHLH genes that have not been identified and named, which will hinder the later study of SlbHLHs. In total, 195 SlbHLHs that were unevenly distributed onto 12 chromosomes were identified from the tomato genome and were classified into 27 subfamilies based on their molecular features. The collinearity between SlbHLHs and interrelated orthologs from 10 plants further revealed evolutionary insights into SlbHLHs. Cis-element investigations of SlbHLHs promotors further suggested the potential roles of SlbHLHs in tomato development and stress responses. A total of 30 SlbHLHs were defined as the differentially expressed genes in response to salt stress by RNA-seq. The expression profiles of selected SlbHLHs were varyingly and markedly induced by multiple abiotic stresses and hormone treatments. These results provide valuable information to further understand the significance and intricacy of the bHLH transcription factor family, and lay a foundation for further exploring functions and possible regulatory mechanisms of SlbHLH members in abiotic stress tolerance, which will be significant for the study of tomato stress resistance and agricultural productivity.

13 July 2023 in Journal of Integrative Agriculture
Verified
Journal Article
Open access
DDDan Du
Dan Du
XHXin Hu
Xin Hu
XSXiao-Mei Song
Xiao-Mei Song
XXXiao-Jiao Xia
Xiao-Jiao Xia
ZSZhen-Yu Sun
Zhen-Yu Sun
YPYu Pan
Yu Pan

31 October 2024 in Horticulturae
Verified
Journal Article
Open access
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XZXinhui Zhang
Xinhui Zhang
BABilal Ahmad
Bilal Ahmad
SZShuang Zeng
Shuang Zeng
YLYuhan Lan
Yuhan Lan
XHXin Hu
Xin Hu
DDDan Du
Dan Du
Shi-related sequence (SRS) proteins, which consist of the RING-like zinc finger domain and IGGH domain, are plant-specific transcription factors that have been well-studied in several plant species. However, information about SRS genes and their roles in cucumber (Cucumis sativus L.) is limited. Therefore, we performed detailed bioinformatic analysis of the SRS gene family, including gene numbers and positions, genes structures, conserved motif distribution patterns, phylogenetic analysis, and promoter cis-element analysis. Eight SRS genes were identified in cucumber and distributed on all seven cucumber chromosomes. SRS genes are conserved in plants and divided into two groups in cucumber based on their protein sequence. In silico analysis predicted that most genes may function in response to abiotic stresses and phytohormones. Gene ontology analysis predicted the possible involvement of genes in development and reproduction, and DNA and protein binding on a molecular level. Furthermore, the differential expression pattern of SRS genes in leaf, stem and root under the condition of Zn2+ stress suggested their roles in response to Zn2+ stress. Furthermore, our metal tolerance assay suggested that CsSRS2 and CsSRS5 mediated enhanced tolerance to Zn2+ stress in Escherichia coli cells. Our study provides a foundation for the functional study of SRS genes in cucumber.

21 May 2026 in Horticulturae
Verified
Journal Article
Open access
PDF file
XHXin Hu
Xin Hu
KMKaixuan Ma*
Kaixuan Ma*
YSYing Su
Ying Su
JDJiale Deng
Jiale Deng
DDDan Du
Dan Du
YPYu Pan
Yu Pan
Heat stress (HS), increasingly intensified by climate change, severely restricts tomato growth and productivity. Although core heat shock factor-mediated transcriptional networks have been extensively characterized, how lipid metabolic reprogramming is transcriptionally coordinated during thermotolerance remains unclear. Using SlHDZ19 overexpression and mutant lines together with transcriptomic, biochemical, promoter-binding, and gene-silencing analyses, we show that the homeobox-leucine zipper transcription factor SlHDZ19 promotes tomato (Solanum lycopersicum) thermotolerance by activating a PLA2-dependent lipid-metabolic transcriptional program in leaves. SlHDZ19 overexpression generally improved heat-stress performance, while SlHDZ19 mutant lines exhibited heightened sensitivity, including more severe wilting, higher electrolyte leakage, and reduced proline accumulation and CAT activity under heat stress. Transcriptomic analysis revealed that SlHDZ19 is required for the full induction of canonical heat-responsive genes and that the linoleic acid metabolism pathway was repeatedly implicated in SlHDZ19-dependent transcriptional changes. SlHDZ19 binds to and activates the promoters of SlPLA2α, which encodes a phospholipase A2 involved in releasing linoleic acid from membrane lipids, and three lipoxygenase genes (SlLox7, SlLox8, and SlLoxC), accompanied by elevated overall PLA2 and LOX activities in SlHDZ19-overexpressing plants. Moreover, genetic silencing of SlPLA2α in both wild-type and SlHDZ19-overexpressing backgrounds supported its functional requirement downstream of SlHDZ19 in thermotolerance. Collectively, our findings support a thermotolerance module in which SlHDZ19 transcriptionally regulates PLA2- and LOX-associated steps of linoleic acid metabolism, potentially linking lipid-associated signaling and membrane remodeling with heat stress adaptation in tomato.