B Daniel Pierce

Dr. B Daniel Pierce

University of Richmond, Richmond, California, USA

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 June 2024 in Medicinal Research Reviews
Verified
Journal Article
Open access
PPPiyusha Pagare
Piyusha Pagare
MMMina McGinn
Mina McGinn
MGMohini S. Ghatge
Mohini S. Ghatge
VSVibha Shekhar
Vibha Shekhar
RARana T. Alhashimi
Rana T. Alhashimi
Martin SafoMartin Safo
Martin Safo
For the last two decades, the aromatic aldehyde 5‐hydroxymethyl‐furfural (5‐HMF) has been the subject of several investigations for its pharmacologic potential. In 2004, the Safo group reported that 5‐HMF has potent antisickling activity by targeting and ameliorating the primary pathophysiology of hypoxia‐induced sickling of erythrocytes (red blood cells [RBC]). Following the encouraging outcome of the preclinical and phase I/II clinical studies of 5‐HMF for the treatment of sickle cell disease (SCD), there have been multiple studies suggesting 5‐HMF has several other biological or pharmacologic activities, including anti‐allergic, antioxidant, anti‐hypoxic, anti‐ischemic, cognitive improvement, anti‐tyrosinase, anti‐proliferation, cytoprotective, and anti‐inflammatory activities. The wide range of its effects makes 5‐HMF a potential candidate for treating a variety of diseases including cognitive disorders, gout, allergic disorders, anemia, hypoxia, cancers, ischemia, hemorrhagic shock, liver fibrosis, and oxidative injury. Several of these therapeutic claims are currently under investigation and, while promising, vary in terms of the strength of their evidence. This review presents the research regarding the therapeutic potential of 5‐HMF in addition to its sources, physicochemical properties, safety, absorption, distribution, metabolism, and excretion (ADME) profiles.

Verified
Journal Article
Open access
PDF file
DADina Alramadhani
Dina Alramadhani
AAAnfal S Aljahdali
Anfal S Aljahdali
OAOsheiza Abdulmalik
Osheiza Abdulmalik
BPB Daniel Pierce
B Daniel Pierce
Martin SafoMartin Safo
Martin Safo
Sickle cell disease (SCD) is a genetic disorder that affects millions of individuals worldwide. Chronic anemia, hemolysis, and vasculopathy are associated with SCD, and their role has been well characterized. These symptoms stem from hemoglobin (Hb) polymerization, which is the primary event in the molecular pathogenesis of SCD and contributes to erythrocyte or red blood cell (RBC) sickling, stiffness, and vaso-occlusion. The disease is caused by a mutation at the sixth position of the β-globin gene, coding for sickle Hb (HbS) instead of normal adult Hb (HbA), which under hypoxic conditions polymerizes into rigid fibers to distort the shapes of the RBCs. Only a few therapies are available, with the universal effectiveness of recently approved therapies still being monitored. In this review, we first focus on how sickle RBCs have altered metabolism and then highlight how this understanding reveals potential targets involved in the pathogenesis of the disease, which can be leveraged to create novel therapeutics for SCD.

16 May 2022 in Frontiers in Microbiology
Verified
Journal Article
Open access
ASAddison Swackhammer
Addison Swackhammer
EPEdward A. P. Provencher
Edward A. P. Provencher
ADAkua K. Donkor
Akua K. Donkor
JGJessica Garofalo
Jessica Garofalo
SDSinead Dowling
Sinead Dowling
BPB Daniel Pierce
B Daniel Pierce
Agrobacterium tumefaciens pathogenesis of plants is initiated with signal reception and culminates with transforming the genomic DNA of its host. The histidine sensor kinase VirA receives and reacts to discrete signaling molecules for the full induction of the genes necessary for this process. Though many of the components of this process have been identified, the precise mechanism of how VirA coordinates the response to host signals, namely phenols and sugars, is unknown. Recent advances of molecular modeling have allowed us to test structure/function predictions and contextualize previous experiments with VirA. In particular, the deep mind software AlphaFold has generated a structural model for the entire protein, allowing us to construct a model that addresses the mechanism of VirA signal reception. Here, we deepen our analysis of the region of VirA that is critical for phenol reception, model and probe potential phenol-binding sites of VirA, and refine its mechanism to strengthen our understanding of A. tumefaciens signal perception.

16 July 2020 in Frontiers in Plant Science
Verified
Journal Article
Open access
PDF file
SLStephanie Liu
Stephanie Liu
YLYi-Han Lin
Yi-Han Lin
AMAidan Murphy
Aidan Murphy
JAJosh Anderson
Josh Anderson
NWNicole Walker
Nicole Walker
BPB Daniel Pierce
B Daniel Pierce
The rich collection of microbes colonizing the plant root making up the rhizosphere function as a multigenomic organ for nutrient distribution. The extent to which its dynamic mutualistic cellular order depends on morphogenic signaling, while likely, remains unknown. We have shown that reaction-diffusion chemical networks constructed with model plant and bacterial metabolites can mimic processes ranging from oxidative burst kinetics to traveling waves and extracellular stationary state reaction-diffusion networks for spatiotemporal ordering of the rhizosphere. Plant parasites and pathogens can be limited by host attachment require dynamic informational networks and continue to provide insight into what controls the rhizosphere. Here we take advantage of Agrobacterium tumefaciens, a plant pathogen with a gated receptor that requires simultaneous perception of two plant metabolites. Genetic manipulations have created receptors allowing each metabolite concentration to be correlated with pathogen behavior. The development of the florescent strains used here provide initial maps of the reaction-diffusion dynamics existing in the rhizosphere, revealing significant differences in the signaling landscape of host and non-host plants before and after wounding, specifically highlighting networks that may inform rhizosphere organization.

3 August 2023 in Frontiers in Education
Verified
Journal Article
Open access
BPB Daniel Pierce
B Daniel Pierce
In the early 2000s, our primarily undergraduate, white institution (PUI/PWI), began recruiting and enrolling higher numbers of students of color and first-generation college students. However, like many of our peer institutions, our established pedagogies and mindsets did not provide these students an educational experience to enable them to persist and thrive in STEM. Realizing the need to systematically address our lack of inclusivity in science majors, in 2012 faculty from multiple disciplines developed the Science, Math, and Research Training (SMART) program. Here, we describe an educational innovation, originally funded by a grant from the Howard Hughes Medical Institute, designed to support and retain students of color, first generation college students, and other students with marginalized identities in the sciences through a cohort-based, integrated, and inclusive first-year experience focused on community and sense of belonging. The SMART program engages first-year students with semester-long themed courses around “real world” problems of antibiotic resistance and viral infections while integrating the fields of Biology, Chemistry, Mathematics, and an optional Computer Science component. In the decade since its inception, 97% of SMART students have graduated or are on track to graduate, with 80.9% of these students earning a major in a STEM discipline. Here, we present additional student outcomes since the initiation of this program, results of the student self-evaluative surveys SALG and CURE, and lessons we have learned from a decade of this educational experience.

8 November 2021 in Frontiers in Communication
Verified
Journal Article
Open access
BPB Daniel Pierce
B Daniel Pierce
My participation in the Emory Tibet Science Initiative (ETSI) has afforded me considerable means to enrich my teaching at the undergraduate level. Here, I discuss how I translated lessons learned from working with Tibetan Monks to teaching in a primarily undergraduate institution, including: 1) introducing each course with a challenge to the assumptions made as “Western scientists” 2) using the unique monastic pedagogy of debate to facilitate classroom scholarship, and 3) embracing compassion as a central tenet to engage and empower student learning, which has become the cornerstone of my teaching philosophy. In addition, I brought undergraduates with me to participate in ETSI, and the experience had a profound effect on their educational and career paths. These experiences with the Tibetan monks transformed my teaching and continue to inform how I approach undergraduate education.