Eugene Permyakov

Prof. Eugene Permyakov

Russian Academy of Sciences
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Research Focus & Metrics

Academic Career Length

30Years (1997-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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20 September 2002 in Biochemistry
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Journal Article
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JGJohn Goers
John Goers
Eugene PermyakovEugene Permyakov
Eugene Permyakov
EPEugene A. Permyakov
Eugene A. Permyakov
VUVladimir N. Uversky
Vladimir N. Uversky
AFAnthony L. Fink
Anthony L. Fink

15 March 2021 in Encyclopedia
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Journal Article
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Eugene PermyakovEugene Permyakov
Eugene Permyakov
Metal ions play several major roles in proteins: structural, regulatory, and enzymatic. The binding of some metal ions increase stability of proteins or protein domains. Some metal ions can regulate various cell processes being first, second, or third messengers. Some metal ions, especially transition metal ions, take part in catalysis in many enzymes. From ten to twelve metals are vitally important for activity of living organisms: sodium, potassium, magnesium, calcium, manganese, iron, cobalt, zinc, nickel, vanadium, molybdenum, and tungsten. This short review is devoted to structural, physical, chemical, and physiological properties of proteins, which specifically bind these metal cations.

20 August 2020 in Biomolecules
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Eugene PermyakovEugene Permyakov
Eugene Permyakov
α-Lactalbumin (α-LA) is a small (Mr 14,200), acidic (pI 4–5), Ca2+-binding protein. α-LA is a regulatory component of lactose synthase enzyme system functioning in the lactating mammary gland. The protein possesses a single strong Ca2+-binding site, which can also bind Mg2+, Mn2+, Na+, K+, and some other metal cations. It contains several distinct Zn2+-binding sites. Physical properties of α-LA strongly depend on the occupation of its metal binding sites by metal ions. In the absence of bound metal ions, α-LA is in the molten globule-like state. The binding of metal ions, and especially of Ca2+, increases stability of α-LA against the action of heat, various denaturing agents and proteases, while the binding of Zn2+ to the Ca2+-loaded protein decreases its stability and causes its aggregation. At pH 2, the protein is in the classical molten globule state. α-LA can associate with membranes at neutral or slightly acidic pH at physiological temperatures. Depending on external conditions, α-LA can form amyloid fibrils, amorphous aggregates, nanoparticles, and nanotubes. Some of these aggregated states of α-LA can be used in practical applications such as drug delivery to tissues and organs. α-LA and some of its fragments possess bactericidal and antiviral activities. Complexes of partially unfolded α-LA with oleic acid are cytotoxic to various tumor and bacterial cells. α-LA in the cytotoxic complexes plays a role of a delivery carrier of cytotoxic fatty acid molecules into tumor and bacterial cells across the cell membrane. Perhaps in the future the complexes of α-LA with oleic acid will be used for development of new anti-cancer drugs.

22 October 2003 in Proteins: Structure, Function, and Bioinformatics
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Eugene PermyakovEugene Permyakov
Eugene Permyakov
IMIan S. Millett
Ian S. Millett
SDSebastian Doniach
Sebastian Doniach
EPEugene A. Permyakov
Eugene A. Permyakov
VUVladimir N. Uversky
Vladimir N. Uversky

14 October 2014 in PLOS ONE
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KDKonstantin Denessiouk
Konstantin Denessiouk
Eugene PermyakovEugene Permyakov
Eugene Permyakov
ADAlexander Denesyuk
Alexander Denesyuk
EPEugene Permyakov
Eugene Permyakov
MJMark S Johnson
Mark S Johnson
Proteins with EF-hand calcium-binding motifs are essential for many cellular processes, but are also associated with cancer, autism, cardiac arrhythmias, and Alzheimer's, skeletal muscle and neuronal diseases. Functionally, all EF-hand proteins are divided into two groups: (1) calcium sensors, which function to translate the signal to various responses; and (2) calcium buffers, which control the level of free Ca2+ ions in the cytoplasm. The borderline between the two groups is not clear, and many proteins cannot be described as definitive buffers or sensors. Here, we describe two highly-conserved structural motifs found in all known different families of the EF-hand proteins. The two motifs provide a supporting scaffold for the DxDxDG calcium binding loop and contribute to the hydrophobic core of the EF hand domain. The motifs allow more precise identification of calcium buffers and calcium sensors. Based on the characteristics of the two motifs, we could classify individual EF-hand domains into five groups: (1) Open static; (2) Closed static; (3) Local dynamic; (4) Dynamic; and (5) Local static EF-hand domains.

12 November 2008 in Biochemistry
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Journal Article
Closed access
EKEkaterina L. Knyazeva
Ekaterina L. Knyazeva
VGValery M. Grishchenko
Valery M. Grishchenko
RFRoman S. Fadeev
Roman S. Fadeev
VAVladimir S. Akatov
Vladimir S. Akatov
Eugene PermyakovEugene Permyakov
Eugene Permyakov
EPEugene A. Permyakov
Eugene A. Permyakov